PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022941213.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

C2H2

Protein Properties

Length: 517aa MW: 54192.7 Da PI: 8.5334

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022941213.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.2	1.5e-05	63	85	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_022941213.1 63 FVCEICNKGFQRDQNLQLHRRGH 85 89*******************88 PP
2	zf-C2H2	15.7	4.3e-05	139	161	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ C+k + +s+ k H++t+ XP_022941213.1 139 WKCERCSKKYAVQSDWKAHMKTC 161 58*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 517 aa Download sequence
MVDLENSSPV EVSRDAGLSS SGYIEPVAVV APAKKKRNLP GMPDPAAEVI ALSPESLLAT 60 NRFVCEICNK GFQRDQNLQL HRRGHNLPWK LRQRTSNEVR KRVYVCPEPS CVHHNPARAL 120 GDLTGIKKHF CRKHGEKKWK CERCSKKYAV QSDWKAHMKT CGTREYKCDC GTLFSRRDSF 180 ITHRAFCDVL AEESARAQTL AVQNSEGKES TTSKAAVTSP PPPPLTPSTT VVSPALSIHS 240 SELADNPIRL PSVSTPAATT CLTSASVNST TNASANGSSS NNVFGNCTVF APSASISGTT 300 QISPTLPPPS LPASIVPYDC ASTRPSASAV NPTSLSLSTS LYLSSKGSSL FAPSDQDRLQ 360 YTWSTQPAAM SATALLQKAA EMGATASNPS LFRGFGMATS STGQDTSATI QWSRNLNRDH 420 RNGSSLTAGV GLDLPSGPDG SGLMMAGGPF CSFGSQPMTR DLLGLGLGGG GASASRFSAL 480 IASMGGGSGY PVAASDACGG SGNGSPSGDA WDQDEKH

Sequence ? help Back to Top

Protein Sequence Length: 517 aa Download sequence

MVDLENSSPV EVSRDAGLSS SGYIEPVAVV APAKKKRNLP GMPDPAAEVI ALSPESLLAT  60
NRFVCEICNK GFQRDQNLQL HRRGHNLPWK LRQRTSNEVR KRVYVCPEPS CVHHNPARAL  120
GDLTGIKKHF CRKHGEKKWK CERCSKKYAV QSDWKAHMKT CGTREYKCDC GTLFSRRDSF  180
ITHRAFCDVL AEESARAQTL AVQNSEGKES TTSKAAVTSP PPPPLTPSTT VVSPALSIHS  240
SELADNPIRL PSVSTPAATT CLTSASVNST TNASANGSSS NNVFGNCTVF APSASISGTT  300
QISPTLPPPS LPASIVPYDC ASTRPSASAV NPTSLSLSTS LYLSSKGSSL FAPSDQDRLQ  360
YTWSTQPAAM SATALLQKAA EMGATASNPS LFRGFGMATS STGQDTSATI QWSRNLNRDH  420
RNGSSLTAGV GLDLPSGPDG SGLMMAGGPF CSFGSQPMTR DLLGLGLGGG GASASRFSAL  480
IASMGGGSGY PVAASDACGG SGNGSPSGDA WDQDEKH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-116	C2H2 family protein