PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022941083.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

C2H2

Protein Properties

Length: 358aa MW: 40033.3 Da PI: 9.2232

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022941083.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.8	9.3e-06	51	73	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_022941083.1 51 FVCEICNKGFQRDQNLQLHRRGH 73 89*******************88 PP
2	zf-C2H2	13.1	0.00029	127	149	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H + + XP_022941083.1 127 WKCEKCSKRYAVQSDWKAHSKIC 149 58*****************9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 358 aa Download sequence
MMKKGNLTAE EHSPPPPPPP SKKKRNLPGN PDPDAEVIAL SPKALLTTNR FVCEICNKGF 60 QRDQNLQLHR RGHNLPWKLK QRSNKEVRKK VYVCPELTCV HHHPSRALGD LTGIKKHFCR 120 KHGEKKWKCE KCSKRYAVQS DWKAHSKICG TREYRCDCGT LFSRRDSFIT HRAFCDALAQ 180 ESTNFASSAM NNSNPIQPIF STLRQFPLKT ENQDPFYPST SNILNPFNPN HNPNPTSIGF 240 GLAGPGSSLN PVFGSAWEMN SPNMMAFEEP SFEEALNGIL MNNRANKDGD KCSGGGGGSG 300 GGAEEITRDL LGLRALARQP DQRMFENEIV NDSLNLGSSS SMFGLHLNHP TQTMFWRD

Sequence ? help Back to Top

Protein Sequence Length: 358 aa Download sequence

MMKKGNLTAE EHSPPPPPPP SKKKRNLPGN PDPDAEVIAL SPKALLTTNR FVCEICNKGF  60
QRDQNLQLHR RGHNLPWKLK QRSNKEVRKK VYVCPELTCV HHHPSRALGD LTGIKKHFCR  120
KHGEKKWKCE KCSKRYAVQS DWKAHSKICG TREYRCDCGT LFSRRDSFIT HRAFCDALAQ  180
ESTNFASSAM NNSNPIQPIF STLRQFPLKT ENQDPFYPST SNILNPFNPN HNPNPTSIGF  240
GLAGPGSSLN PVFGSAWEMN SPNMMAFEEP SFEEALNGIL MNNRANKDGD KCSGGGGGSG  300
GGAEEITRDL LGLRALARQP DQRMFENEIV NDSLNLGSSS SMFGLHLNHP TQTMFWRD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	78	90	KLKQRSNKEVRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-111	C2H2 family protein