PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022940829.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

MYB

Protein Properties

Length: 892aa MW: 99307.1 Da PI: 5.8847

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022940829.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.1	8.7e-18	14	60	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEde+l +av + g++Wk+Ia+++ Rt+ qc +rwqk+l XP_022940829.1 14 KGHWTPEEDEILRKAVDHFKGKNWKKIAECFK-DRTDVQCLHRWQKVL 60 789**************************9.**********986 PP
2	Myb_DNA-binding	65.5	9.8e-21	66	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEde +v++v+++G++ W+tIa++++ gR +kqc++rw+++l XP_022940829.1 66 KGPWSKEEDETIVELVNKYGPKKWSTIAKHLP-GRIGKQCRERWHNHL 112 79****************************.***********97 PP
3	Myb_DNA-binding	48.8	1.6e-15	118	160	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +WT+eE++ l++a++ +G++ W+ + ++ gRt++ +k++w+ XP_022940829.1 118 KEAWTQEEELALIRAHQIYGNR-WAELTKFLP-GRTDNAIKNHWN 160 579*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 892 aa Download sequence
MFRRTSGPTR RSTKGHWTPE EDEILRKAVD HFKGKNWKKI AECFKDRTDV QCLHRWQKVL 60 NPELVKGPWS KEEDETIVEL VNKYGPKKWS TIAKHLPGRI GKQCRERWHN HLNPNINKEA 120 WTQEEELALI RAHQIYGNRW AELTKFLPGR TDNAIKNHWN SSVKKKLDSY LASGLLSQLQ 180 DPISVGQPNQ LLASSSKVLG SGNDSGSYGM ETEEISECSQ DATVADSFMI DSACETLHMR 240 KEVQLIEDLG LGKEQSSSPI SCSEPYYHHH PAMEEITCPI AEFDQEVGHC LSPSEKNPSH 300 DCRTTSNREY QCHLNEFPNI SSLQLDKEAP QFEAIGTGMG ESHGAGSSSQ NPSMVKGATA 360 SVQIECRFIS DDEFCRVLFS DSKSDQCNLS INLKKGSYVP EMCDFEVPVQ SLGTRKVENN 420 HSSASQVYDY PSGSDVQEKY LLPQSCMHIP SVVSVNNEMI LLGGSGSNKL FVGAREHECI 480 TSQENGFVYD AGTSRPSCFH VTGNPEMQEQ STGTCSHERP KPHNEHLDSG VLCYEPPRFP 540 SLDVPFFNCD LIQAGSEMQY SPLGIRQLMM SSLNGVTPFR LWDSPSHDTS PDAVLKNAAE 600 TFSSTPSILK KRHRDFLSPL SERRIDKKLE TVVTSRLTEN FSRLDVVFKD GPESTEDKEN 660 MHSTFEKKQG TADVQICVQS TAEIVASGVL VEHDANDLLL HSVDQNTLSS SARIKKRHSS 720 ENLHGPSSTP NYCKNHPESD SVATMCELPV ILSASVKKTD DNRPQIATTG IASLPGETPV 780 KRSIDSPSAW MSPWFFNSFL PGPRIDTEIS IEDIGYFSSP KERSLDAIGL MKQVCERTAA 840 ACASAHEVLG NETPETLLRG SRMKHRHCDE TVLAECRTLD FSECGSPGEM ST

Sequence ? help Back to Top

Protein Sequence Length: 892 aa Download sequence

MFRRTSGPTR RSTKGHWTPE EDEILRKAVD HFKGKNWKKI AECFKDRTDV QCLHRWQKVL  60
NPELVKGPWS KEEDETIVEL VNKYGPKKWS TIAKHLPGRI GKQCRERWHN HLNPNINKEA  120
WTQEEELALI RAHQIYGNRW AELTKFLPGR TDNAIKNHWN SSVKKKLDSY LASGLLSQLQ  180
DPISVGQPNQ LLASSSKVLG SGNDSGSYGM ETEEISECSQ DATVADSFMI DSACETLHMR  240
KEVQLIEDLG LGKEQSSSPI SCSEPYYHHH PAMEEITCPI AEFDQEVGHC LSPSEKNPSH  300
DCRTTSNREY QCHLNEFPNI SSLQLDKEAP QFEAIGTGMG ESHGAGSSSQ NPSMVKGATA  360
SVQIECRFIS DDEFCRVLFS DSKSDQCNLS INLKKGSYVP EMCDFEVPVQ SLGTRKVENN  420
HSSASQVYDY PSGSDVQEKY LLPQSCMHIP SVVSVNNEMI LLGGSGSNKL FVGAREHECI  480
TSQENGFVYD AGTSRPSCFH VTGNPEMQEQ STGTCSHERP KPHNEHLDSG VLCYEPPRFP  540
SLDVPFFNCD LIQAGSEMQY SPLGIRQLMM SSLNGVTPFR LWDSPSHDTS PDAVLKNAAE  600
TFSSTPSILK KRHRDFLSPL SERRIDKKLE TVVTSRLTEN FSRLDVVFKD GPESTEDKEN  660
MHSTFEKKQG TADVQICVQS TAEIVASGVL VEHDANDLLL HSVDQNTLSS SARIKKRHSS  720
ENLHGPSSTP NYCKNHPESD SVATMCELPV ILSASVKKTD DNRPQIATTG IASLPGETPV  780
KRSIDSPSAW MSPWFFNSFL PGPRIDTEIS IEDIGYFSSP KERSLDAIGL MKQVCERTAA  840
ACASAHEVLG NETPETLLRG SRMKHRHCDE TVLAECRTLD FSECGSPGEM ST

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32730.2	0.0	MYB family protein