PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022940828.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

MYB

Protein Properties

Length: 915aa MW: 101693 Da PI: 5.7542

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022940828.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56	9e-18	37	83	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEde+l +av + g++Wk+Ia+++ Rt+ qc +rwqk+l XP_022940828.1 37 KGHWTPEEDEILRKAVDHFKGKNWKKIAECFK-DRTDVQCLHRWQKVL 83 789**************************9.**********986 PP
2	Myb_DNA-binding	65.5	1e-20	89	135	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEde +v++v+++G++ W+tIa++++ gR +kqc++rw+++l XP_022940828.1 89 KGPWSKEEDETIVELVNKYGPKKWSTIAKHLP-GRIGKQCRERWHNHL 135 79****************************.***********97 PP
3	Myb_DNA-binding	48.8	1.6e-15	141	183	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +WT+eE++ l++a++ +G++ W+ + ++ gRt++ +k++w+ XP_022940828.1 141 KEAWTQEEELALIRAHQIYGNR-WAELTKFLP-GRTDNAIKNHWN 183 579*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 915 aa Download sequence
MEGDKTISTP SDNPEIGDQR IRALHGRTSG PTRRSTKGHW TPEEDEILRK AVDHFKGKNW 60 KKIAECFKDR TDVQCLHRWQ KVLNPELVKG PWSKEEDETI VELVNKYGPK KWSTIAKHLP 120 GRIGKQCRER WHNHLNPNIN KEAWTQEEEL ALIRAHQIYG NRWAELTKFL PGRTDNAIKN 180 HWNSSVKKKL DSYLASGLLS QLQDPISVGQ PNQLLASSSK VLGSGNDSGS YGMETEEISE 240 CSQDATVADS FMIDSACETL HMRKEVQLIE DLGLGKEQSS SPISCSEPYY HHHPAMEEIT 300 CPIAEFDQEV GHCLSPSEKN PSHDCRTTSN REYQCHLNEF PNISSLQLDK EAPQFEAIGT 360 GMGESHGAGS SSQNPSMVKG ATASVQIECR FISDDEFCRV LFSDSKSDQC NLSINLKKGS 420 YVPEMCDFEV PVQSLGTRKV ENNHSSASQV YDYPSGSDVQ EKYLLPQSCM HIPSVVSVNN 480 EMILLGGSGS NKLFVGAREH ECITSQENGF VYDAGTSRPS CFHVTGNPEM QEQSTGTCSH 540 ERPKPHNEHL DSGVLCYEPP RFPSLDVPFF NCDLIQAGSE MQYSPLGIRQ LMMSSLNGVT 600 PFRLWDSPSH DTSPDAVLKN AAETFSSTPS ILKKRHRDFL SPLSERRIDK KLETVVTSRL 660 TENFSRLDVV FKDGPESTED KENMHSTFEK KQGTADVQIC VQSTAEIVAS GVLVEHDAND 720 LLLHSVDQNT LSSSARIKKR HSSENLHGPS STPNYCKNHP ESDSVATMCE LPVILSASVK 780 KTDDNRPQIA TTGIASLPGE TPVKRSIDSP SAWMSPWFFN SFLPGPRIDT EISIEDIGYF 840 SSPKERSLDA IGLMKQVCER TAAACASAHE VLGNETPETL LRGSRMKHRH CDETVLAECR 900 TLDFSECGSP GEMST

Sequence ? help Back to Top

Protein Sequence Length: 915 aa Download sequence

MEGDKTISTP SDNPEIGDQR IRALHGRTSG PTRRSTKGHW TPEEDEILRK AVDHFKGKNW  60
KKIAECFKDR TDVQCLHRWQ KVLNPELVKG PWSKEEDETI VELVNKYGPK KWSTIAKHLP  120
GRIGKQCRER WHNHLNPNIN KEAWTQEEEL ALIRAHQIYG NRWAELTKFL PGRTDNAIKN  180
HWNSSVKKKL DSYLASGLLS QLQDPISVGQ PNQLLASSSK VLGSGNDSGS YGMETEEISE  240
CSQDATVADS FMIDSACETL HMRKEVQLIE DLGLGKEQSS SPISCSEPYY HHHPAMEEIT  300
CPIAEFDQEV GHCLSPSEKN PSHDCRTTSN REYQCHLNEF PNISSLQLDK EAPQFEAIGT  360
GMGESHGAGS SSQNPSMVKG ATASVQIECR FISDDEFCRV LFSDSKSDQC NLSINLKKGS  420
YVPEMCDFEV PVQSLGTRKV ENNHSSASQV YDYPSGSDVQ EKYLLPQSCM HIPSVVSVNN  480
EMILLGGSGS NKLFVGAREH ECITSQENGF VYDAGTSRPS CFHVTGNPEM QEQSTGTCSH  540
ERPKPHNEHL DSGVLCYEPP RFPSLDVPFF NCDLIQAGSE MQYSPLGIRQ LMMSSLNGVT  600
PFRLWDSPSH DTSPDAVLKN AAETFSSTPS ILKKRHRDFL SPLSERRIDK KLETVVTSRL  660
TENFSRLDVV FKDGPESTED KENMHSTFEK KQGTADVQIC VQSTAEIVAS GVLVEHDAND  720
LLLHSVDQNT LSSSARIKKR HSSENLHGPS STPNYCKNHP ESDSVATMCE LPVILSASVK  780
KTDDNRPQIA TTGIASLPGE TPVKRSIDSP SAWMSPWFFN SFLPGPRIDT EISIEDIGYF  840
SSPKERSLDA IGLMKQVCER TAAACASAHE VLGNETPETL LRGSRMKHRH CDETVLAECR  900
TLDFSECGSP GEMST

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32730.2	0.0	MYB family protein