PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_022940516.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
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Family | GRAS | ||||||||
Protein Properties | Length: 582aa MW: 64751 Da PI: 5.6784 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 418.2 | 7e-128 | 212 | 581 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 l+elL+ecA+a++++ +e ++l+a + +s +g+p+qRl ay++e+L ar +s+ ++y+al+++e + s++ l+++++++e++P+lkf++ XP_022940516.1 212 LKELLIECARALAENRMEDFDNLVAIARGAVSISGEPIQRLGAYMVEGLVARKEESGANIYRALNCREPA---SDDLLSYMHMLYEICPYLKFGY 303 5799*****************************************************************9...99******************** PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188 ++aN aI ea +e+r+HiiDf+i+qG+QW++LlqaLa+Rp+g+p++RiTg+++p s+ + e le +++rLa++ ++ g+p+ef+ l d XP_022940516.1 304 MAANGAIAEACRNEDRIHIIDFQITQGTQWLTLLQALAARPGGAPHVRITGIDDPVSKyaRGEGLEVVERRLAEVSRKYGIPVEFHGL-PVFAPD 397 *******************************************************999999**************************6.777899 PP GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283 ++ +L+++pgEalaVn+ lqlh+++desv+++++rd +L++vkslsP+vv++veqe+++n+++F++rf+e+++yy a+f+s++++lpr+s++ i XP_022940516.1 398 VTRGMLDIRPGEALAVNFPLQLHHTPDESVDVNNPRDGLLRMVKSLSPRVVTLVEQESNTNTTPFFNRFVETMDYYLAIFESIDVTLPRNSKKGI 492 9********************************************************************************************** PP GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 ++E+++l+++ivnv+aceg+er+erhe ++kW+ rl++aGF + pls+++++ +++llr ++ + y++ e++g+++lgWk+r+L+s+SaW XP_022940516.1 493 NIEQHCLAKDIVNVIACEGREREERHELFGKWKTRLTMAGFCQFPLSSYVNSVIRSLLRCYS-KHYTLVEKDGAMLLGWKNRNLISASAW 581 ***********************************************************999.55************************* PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 582 aa Download sequence |
MDSHQLFGFG VNSAGVSCTP YSSIPSLPNT LLGPLKFSVR NSPASSSFFS SSYFELDSFR 60 ATTVSDNQDQ RNSPENLSGL SPSCNSSFET NSFNQIASSN LDPVSNAFVY DGCSNENISY 120 TLKQLESVLM GPDNEEVVSK PDASFGDSSR PQIMGQRSYS WSQDRQGGLN LVQSQTLPVS 180 VSQRSQAVHL GKRQKSMDES ILQQGGFSYD NLKELLIECA RALAENRMED FDNLVAIARG 240 AVSISGEPIQ RLGAYMVEGL VARKEESGAN IYRALNCREP ASDDLLSYMH MLYEICPYLK 300 FGYMAANGAI AEACRNEDRI HIIDFQITQG TQWLTLLQAL AARPGGAPHV RITGIDDPVS 360 KYARGEGLEV VERRLAEVSR KYGIPVEFHG LPVFAPDVTR GMLDIRPGEA LAVNFPLQLH 420 HTPDESVDVN NPRDGLLRMV KSLSPRVVTL VEQESNTNTT PFFNRFVETM DYYLAIFESI 480 DVTLPRNSKK GINIEQHCLA KDIVNVIACE GREREERHEL FGKWKTRLTM AGFCQFPLSS 540 YVNSVIRSLL RCYSKHYTLV EKDGAMLLGW KNRNLISASA WY |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48150.1 | 1e-162 | GRAS family protein |