PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022940427.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

C2H2

Protein Properties

Length: 421aa MW: 46124.7 Da PI: 9.671

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022940427.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.8	8.4e-05	181	203	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp Cg++F+ ++L+ H+ + H XP_022940427.1 181 PCPQCGEMFPKIESLELHQAVrH 203 7******************9888 PP

Sequence ? help Back to Top
Protein Sequence Length: 421 aa Download sequence
MALSTSLAIN AEKSRKMKPI NTKRRKKHQH PPPSQPPPPQ PPPSAQSSWD QIKNLITCKQ 60 MEASRVHEPA KRSPANSKLG SSCSSICRFR DVVHGNAKIV HRPDNSPETS SLGQETRLLT 120 TKATNGSSSR SLTAPTRTKN GASASYSSSR GLQLRKLSGC YECHTIVDPS RYPIPRSSIC 180 PCPQCGEMFP KIESLELHQA VRHAVSELGP DDSGRNIVEI IFKSSWLKID RPICKIERIL 240 KVHNTQRTIQ RFEDCRDAVK TRALACARKN PRCAADGNEL LRFHCSELLC DLGSRGSTGL 300 CGSIPGCRVC SVIRHGFQCK PGEPAGVRTT ASSGRAHDSF ECGDGRRRAM LVCRVIAGRV 360 KRIAEDLSAA AVEEENLSAA AASYDSVSRQ SGKYSNLEEL IIFNPKAILP CFVVIYEALQ 420 T

Sequence ? help Back to Top

Protein Sequence Length: 421 aa Download sequence

MALSTSLAIN AEKSRKMKPI NTKRRKKHQH PPPSQPPPPQ PPPSAQSSWD QIKNLITCKQ  60
MEASRVHEPA KRSPANSKLG SSCSSICRFR DVVHGNAKIV HRPDNSPETS SLGQETRLLT  120
TKATNGSSSR SLTAPTRTKN GASASYSSSR GLQLRKLSGC YECHTIVDPS RYPIPRSSIC  180
PCPQCGEMFP KIESLELHQA VRHAVSELGP DDSGRNIVEI IFKSSWLKID RPICKIERIL  240
KVHNTQRTIQ RFEDCRDAVK TRALACARKN PRCAADGNEL LRFHCSELLC DLGSRGSTGL  300
CGSIPGCRVC SVIRHGFQCK PGEPAGVRTT ASSGRAHDSF ECGDGRRRAM LVCRVIAGRV  360
KRIAEDLSAA AVEEENLSAA AASYDSVSRQ SGKYSNLEEL IIFNPKAILP CFVVIYEALQ  420
T

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75710.1	1e-166	C2H2 family protein