PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022940242.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

AP2

Protein Properties

Length: 454aa MW: 51598 Da PI: 9.5143

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022940242.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	51.7	2.2e-16	167	226	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d ++ g ++ ++++lg ++ +e+Aa+a++ a++k++g XP_022940242.1 167 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqtRKgRQVYLGGYDMEEKAARAYDLAALKYWG 226 78*****************988886678446***********************98 PP
2	AP2	51.8	2e-16	269	320	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+fgt eeAa+a++ a+ k++g XP_022940242.1 269 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFGTQEEAAEAYDIAAIKFRG 320 57**************988532...5**********************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 454 aa Download sequence
MESLSTLQPQ EMLPNISPKL EDFLGSANHG REATALSLDS IYYNQNDGAE AVSERQHCLN 60 LFKQQEQHIL FGMFQFPAED ANKESLIASH SYEIRHAMEQ PIDRMSSQDV EPLSLSMSPG 120 SQSSCVTAPT QNCHPGLATM ETKKRGLLGR KKPVHRKLID TFGQRTSQYR GVTRHRWTGR 180 YEAHLWDNSC KKEGQTRKGR QVYLGGYDME EKAARAYDLA ALKYWGPSTH LNFPLKSYQV 240 EIEEMKNMNR QEYVAHLRRK SSGFSRGASI YRGVTRHHQH GRWQARIGRV AGNKDLYLGT 300 FGTQEEAAEA YDIAAIKFRG TNAVTNFDTS RYNVERIMAS SSLLSREIAR RNKEHKLTNA 360 IERKEPTQNI NQIDPSEISN SNNIVWRSAF DNTMLLDRNT TIESIERKLV TSCGYLNHLM 420 GVETATVKDS RKFKAHFSNA SVSLPVMSSV RNDV

Sequence ? help Back to Top

Protein Sequence Length: 454 aa Download sequence

MESLSTLQPQ EMLPNISPKL EDFLGSANHG REATALSLDS IYYNQNDGAE AVSERQHCLN  60
LFKQQEQHIL FGMFQFPAED ANKESLIASH SYEIRHAMEQ PIDRMSSQDV EPLSLSMSPG  120
SQSSCVTAPT QNCHPGLATM ETKKRGLLGR KKPVHRKLID TFGQRTSQYR GVTRHRWTGR  180
YEAHLWDNSC KKEGQTRKGR QVYLGGYDME EKAARAYDLA ALKYWGPSTH LNFPLKSYQV  240
EIEEMKNMNR QEYVAHLRRK SSGFSRGASI YRGVTRHHQH GRWQARIGRV AGNKDLYLGT  300
FGTQEEAAEA YDIAAIKFRG TNAVTNFDTS RYNVERIMAS SSLLSREIAR RNKEHKLTNA  360
IERKEPTQNI NQIDPSEISN SNNIVWRSAF DNTMLLDRNT TIESIERKLV TSCGYLNHLM  420
GVETATVKDS RKFKAHFSNA SVSLPVMSSV RNDV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37750.1	1e-127	AP2 family protein