PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022940241.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

AP2

Protein Properties

Length: 476aa MW: 54002.7 Da PI: 9.2703

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022940241.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	51.6	2.4e-16	189	248	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d ++ g ++ ++++lg ++ +e+Aa+a++ a++k++g XP_022940241.1 189 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqtRKgRQVYLGGYDMEEKAARAYDLAALKYWG 248 78*****************988886678446***********************98 PP
2	AP2	51.7	2.1e-16	291	342	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+fgt eeAa+a++ a+ k++g XP_022940241.1 291 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFGTQEEAAEAYDIAAIKFRG 342 57**************988532...5**********************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 476 aa Download sequence
MPNSFLASQH YNGDLVSPLS VMPLNSDGSL CFMESLSTLQ PQEMLPNISP KLEDFLGSAN 60 HGREATALSL DSIYYNQNDG AEAVSERQHC LNLFKQQEQH ILFGMFQFPA EDANKESLIA 120 SHSYEIRHAM EQPIDRMSSQ DVEPLSLSMS PGSQSSCVTA TMETKKRGLL GRKKPVHRKL 180 IDTFGQRTSQ YRGVTRHRWT GRYEAHLWDN SCKKEGQTRK GRQVYLGGYD MEEKAARAYD 240 LAALKYWGPS THLNFPLKSY QVEIEEMKNM NRQEYVAHLR RKSSGFSRGA SIYRGVTRHH 300 QHGRWQARIG RVAGNKDLYL GTFGTQEEAA EAYDIAAIKF RGTNAVTNFD TSRYNVERIM 360 ASSSLLSREI ARRNKEHKLT NAIERKEPTQ NINQIDPSEI SNSNNIVWRS AFDNTMLLDR 420 NTTIESIERK LVTSCGYLNH LMGVETATVK DSRKFKAHFS NASVSLPVMS SVRNDV

Sequence ? help Back to Top

Protein Sequence Length: 476 aa Download sequence

MPNSFLASQH YNGDLVSPLS VMPLNSDGSL CFMESLSTLQ PQEMLPNISP KLEDFLGSAN  60
HGREATALSL DSIYYNQNDG AEAVSERQHC LNLFKQQEQH ILFGMFQFPA EDANKESLIA  120
SHSYEIRHAM EQPIDRMSSQ DVEPLSLSMS PGSQSSCVTA TMETKKRGLL GRKKPVHRKL  180
IDTFGQRTSQ YRGVTRHRWT GRYEAHLWDN SCKKEGQTRK GRQVYLGGYD MEEKAARAYD  240
LAALKYWGPS THLNFPLKSY QVEIEEMKNM NRQEYVAHLR RKSSGFSRGA SIYRGVTRHH  300
QHGRWQARIG RVAGNKDLYL GTFGTQEEAA EAYDIAAIKF RGTNAVTNFD TSRYNVERIM  360
ASSSLLSREI ARRNKEHKLT NAIERKEPTQ NINQIDPSEI SNSNNIVWRS AFDNTMLLDR  420
NTTIESIERK LVTSCGYLNH LMGVETATVK DSRKFKAHFS NASVSLPVMS SVRNDV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37750.1	1e-141	AP2 family protein