PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022940240.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

AP2

Protein Properties

Length: 486aa MW: 55021.9 Da PI: 9.1607

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022940240.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	51.5	2.4e-16	199	258	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d ++ g ++ ++++lg ++ +e+Aa+a++ a++k++g XP_022940240.1 199 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqtRKgRQVYLGGYDMEEKAARAYDLAALKYWG 258 78*****************988886678446***********************98 PP
2	AP2	51.7	2.2e-16	301	352	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+fgt eeAa+a++ a+ k++g XP_022940240.1 301 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFGTQEEAAEAYDIAAIKFRG 352 57**************988532...5**********************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 486 aa Download sequence
MPNSFLASQH YNGDLVSPLS VMPLNSDGSL CFMESLSTLQ PQEMLPNISP KLEDFLGSAN 60 HGREATALSL DSIYYNQNDG AEAVSERQHC LNLFKQQEQH ILFGMFQFPA EDANKESLIA 120 SHSYEIRHAM EQPIDRMSSQ DVEPLSLSMS PGSQSSCVTA PTQNCHPGLA TMETKKRGLL 180 GRKKPVHRKL IDTFGQRTSQ YRGVTRHRWT GRYEAHLWDN SCKKEGQTRK GRQVYLGGYD 240 MEEKAARAYD LAALKYWGPS THLNFPLKSY QVEIEEMKNM NRQEYVAHLR RKSSGFSRGA 300 SIYRGVTRHH QHGRWQARIG RVAGNKDLYL GTFGTQEEAA EAYDIAAIKF RGTNAVTNFD 360 TSRYNVERIM ASSSLLSREI ARRNKEHKLT NAIERKEPTQ NINQIDPSEI SNSNNIVWRS 420 AFDNTMLLDR NTTIESIERK LVTSCGYLNH LMGVETATVK DSRKFKAHFS NASVSLPVMS 480 SVRNDV

Sequence ? help Back to Top

Protein Sequence Length: 486 aa Download sequence

MPNSFLASQH YNGDLVSPLS VMPLNSDGSL CFMESLSTLQ PQEMLPNISP KLEDFLGSAN  60
HGREATALSL DSIYYNQNDG AEAVSERQHC LNLFKQQEQH ILFGMFQFPA EDANKESLIA  120
SHSYEIRHAM EQPIDRMSSQ DVEPLSLSMS PGSQSSCVTA PTQNCHPGLA TMETKKRGLL  180
GRKKPVHRKL IDTFGQRTSQ YRGVTRHRWT GRYEAHLWDN SCKKEGQTRK GRQVYLGGYD  240
MEEKAARAYD LAALKYWGPS THLNFPLKSY QVEIEEMKNM NRQEYVAHLR RKSSGFSRGA  300
SIYRGVTRHH QHGRWQARIG RVAGNKDLYL GTFGTQEEAA EAYDIAAIKF RGTNAVTNFD  360
TSRYNVERIM ASSSLLSREI ARRNKEHKLT NAIERKEPTQ NINQIDPSEI SNSNNIVWRS  420
AFDNTMLLDR NTTIESIERK LVTSCGYLNH LMGVETATVK DSRKFKAHFS NASVSLPVMS  480
SVRNDV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37750.1	1e-127	AP2 family protein