PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022939460.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

C2H2

Protein Properties

Length: 370aa MW: 41185.9 Da PI: 8.4973

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022939460.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.9	4.1e-06	75	97	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C++ F r nL+ H r+H XP_022939460.1 75 YVCEICNQGFQRDQNLQMHRRRH 97 9*********************9 PP
2	zf-C2H2	14.8	8.2e-05	154	176	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +C+k + +s++k H++t+ XP_022939460.1 154 WVCDKCSKAYAVHSDFKAHLKTC 176 58*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 370 aa Download sequence
MLKPSCSSSS SAAAAAAASA ASTPYSSAAP PLPPPPPNSD HGLTTKRKRR PAGTPDPDAE 60 VVSLSPKTLL ESDRYVCEIC NQGFQRDQNL QMHRRRHKVP WKLLKKPHTV DAIKKKVFVC 120 PEPTCLHHDP CHALGDLVGI KKHFRRKHSN QKHWVCDKCS KAYAVHSDFK AHLKTCGTRG 180 HSCDCGRVFS RVESFIEHQD ACNIRQMRSD QWQLMPLSLP LLQTANPLRG FPILSSNKDH 240 DLNLHLSSPS SAFLNLSIGS NKEPNDKCQL ELAIEEKAYA DEARRDAKRQ IEIAEVEFTN 300 AKMIRQQAQA ELEKARILKE EASRKMSSTI MEITCETCRL HFHMSSIAAA EETSLAISYM 360 SSATTEGDGE

Sequence ? help Back to Top

Protein Sequence Length: 370 aa Download sequence

MLKPSCSSSS SAAAAAAASA ASTPYSSAAP PLPPPPPNSD HGLTTKRKRR PAGTPDPDAE  60
VVSLSPKTLL ESDRYVCEIC NQGFQRDQNL QMHRRRHKVP WKLLKKPHTV DAIKKKVFVC  120
PEPTCLHHDP CHALGDLVGI KKHFRRKHSN QKHWVCDKCS KAYAVHSDFK AHLKTCGTRG  180
HSCDCGRVFS RVESFIEHQD ACNIRQMRSD QWQLMPLSLP LLQTANPLRG FPILSSNKDH  240
DLNLHLSSPS SAFLNLSIGS NKEPNDKCQL ELAIEEKAYA DEARRDAKRQ IEIAEVEFTN  300
AKMIRQQAQA ELEKARILKE EASRKMSSTI MEITCETCRL HFHMSSIAAA EETSLAISYM  360
SSATTEGDGE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	46	51	KRKRRP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68130.1	1e-139	C2H2 family protein