PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022939193.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

MYB

Protein Properties

Length: 402aa MW: 44042.8 Da PI: 6.4309

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022939193.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	58.5	1.6e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+d++k++G g+W++ +++ g+ R++k+c++rw +yl XP_022939193.1 14 KGPWTPEEDQKLLDYIKEHGHGSWRALPSKAGLQRCGKSCRLRWINYL 61 79********************************************97 PP
2	Myb_DNA-binding	51.4	2.5e-16	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ +E++ ++++++lG++ W++Ia +++ +Rt++++k++w+++l XP_022939193.1 67 RGKFSLQEEQTVIQLHALLGNR-WSAIATHLP-KRTDNEIKNYWNTHL 112 89******************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 402 aa Download sequence
MGRSPCCDKV GLKKGPWTPE EDQKLLDYIK EHGHGSWRAL PSKAGLQRCG KSCRLRWINY 60 LRPDIKRGKF SLQEEQTVIQ LHALLGNRWS AIATHLPKRT DNEIKNYWNT HLKKRLAKMG 120 IDPVTHKPKN DALLTGDGQS KSVANLSHIA QWESARLEAE ARLVRESRLR SNAHSSLQQL 180 ANPPCFAASS SSTSTSAPLL SKSEPPAMAS RSLDALKAWN NGWSRSTEGN GGILGRGTGG 240 DLESPTSTLT FSENVPPIMA RGGGGENSVA MIEFVGSSSS CDQGGIMRER EWKEEGIGNP 300 SQLPEYKEGF ENSMSFTSHE MTLSIEATWT AESLRTSDNG IAEEGFTNLL LNNTDERSQS 360 DGGGDESENG SGSGTDYYED NKNYWNSILN LVNSSPSDSS MF

Sequence ? help Back to Top

Protein Sequence Length: 402 aa Download sequence

MGRSPCCDKV GLKKGPWTPE EDQKLLDYIK EHGHGSWRAL PSKAGLQRCG KSCRLRWINY  60
LRPDIKRGKF SLQEEQTVIQ LHALLGNRWS AIATHLPKRT DNEIKNYWNT HLKKRLAKMG  120
IDPVTHKPKN DALLTGDGQS KSVANLSHIA QWESARLEAE ARLVRESRLR SNAHSSLQQL  180
ANPPCFAASS SSTSTSAPLL SKSEPPAMAS RSLDALKAWN NGWSRSTEGN GGILGRGTGG  240
DLESPTSTLT FSENVPPIMA RGGGGENSVA MIEFVGSSSS CDQGGIMRER EWKEEGIGNP  300
SQLPEYKEGF ENSMSFTSHE MTLSIEATWT AESLRTSDNG IAEEGFTNLL LNNTDERSQS  360
DGGGDESENG SGSGTDYYED NKNYWNSILN LVNSSPSDSS MF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15310.1	1e-121	MYB family protein