PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022939159.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

C2H2

Protein Properties

Length: 398aa MW: 43622 Da PI: 9.7603

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022939159.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.8	0.00036	166	188	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C+ Cg++F ++ L+ H ++ H XP_022939159.1 166 PCSECGEVFMKPEALELHKSVrH 188 7*****************99877 PP

Sequence ? help Back to Top
Protein Sequence Length: 398 aa Download sequence
MASAMAKPKT QTKLSRQTHQ NQKPKPPSWA VVRGIFSCKY LQPQQPQEKR QQQEQATEES 60 RKNSKKMRCS GSLCNNTKVT HEVHKNRALS SSSSRYSKAP PLNEQNGIPS ATCSSLSASS 120 SSNSSSGASF RGMPFRKFYG CYECKMVINP VNGMARDPFL RATIWPCSEC GEVFMKPEAL 180 ELHKSVRHAV SELGPEDTSK NIVEIIFQSS WLKKQTPICK IERILKIHNT SKTISRFEEY 240 RDSIKGKAIK LSKKHPRCIA DGNELLRFHC TTLACSLGLN GSSSLCSSIP QCNVCSIIKH 300 GFKVAAEATG GDAGKGILTT ATSGKAHDSA GMSLDSKDKR AMLVCRVIAG RVKKSSESSV 360 EDYDSLAGEA GLYSNLDELY VFSPKAILPC FVVIYGGF

Sequence ? help Back to Top

Protein Sequence Length: 398 aa Download sequence

MASAMAKPKT QTKLSRQTHQ NQKPKPPSWA VVRGIFSCKY LQPQQPQEKR QQQEQATEES  60
RKNSKKMRCS GSLCNNTKVT HEVHKNRALS SSSSRYSKAP PLNEQNGIPS ATCSSLSASS  120
SSNSSSGASF RGMPFRKFYG CYECKMVINP VNGMARDPFL RATIWPCSEC GEVFMKPEAL  180
ELHKSVRHAV SELGPEDTSK NIVEIIFQSS WLKKQTPICK IERILKIHNT SKTISRFEEY  240
RDSIKGKAIK LSKKHPRCIA DGNELLRFHC TTLACSLGLN GSSSLCSSIP QCNVCSIIKH  300
GFKVAAEATG GDAGKGILTT ATSGKAHDSA GMSLDSKDKR AMLVCRVIAG RVKKSSESSV  360
EDYDSLAGEA GLYSNLDELY VFSPKAILPC FVVIYGGF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75710.1	1e-95	C2H2 family protein