PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022938446.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

MYB_related

Protein Properties

Length: 742aa MW: 83080.5 Da PI: 4.5464

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022938446.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	33.9	7.5e-11	589	632	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r +W++ + e++++av+q+G++ + I + ++ gRt+ q+k+++ + XP_022938446.1 589 RTKWSKHDTERFYEAVRQFGTD-FCMIQQLFP-GRTRHQIKLKFKN 632 789*****************.*****.********987 PP

Sequence ? help Back to Top
Protein Sequence Length: 742 aa Download sequence
MDPFDEILSD PGFTSRTGGR FQPKIKPRPK KQTLAPQLST VSQDKKGTTS DAKSCHDGRG 60 NTKSIKSSSQ LPVIEENKES EDDLLLATVR SDFIGCSHHT SVESAIMVDS TQLDLDSCGG 120 ILPSGSTIDG PVGVENPTDD SKNSGILNYS HSSASRAHEA TVLGQSGLGS IQPEDGHSND 180 GKIAGQNTDV FDELEWLDDF HNQPKNEADP SSLKQATISN EDGDLDTQRL EVEECGAGAN 240 ITRDIISSGT TTEQPACKYI PKPKMRVAGD SCTQISQPEI SNTLPPSPQV ISCDTRCMHE 300 ASIGTHSDGV LNDSSINFDD YSPVNQHIEA PVNVESLAYD SYGDILVDDF NSDDQDEMLR 360 EEGGKNGEED PLSQSNMSQQ QEMFPPVGEE IDHSKTSRKL RQQVSHQLDD PEDGVDDFPS 420 ERFSNYDIHG DGYKKNGRRG TKTKTKSLKP SSDNEKPARK RKEANKAVPD LQAEKRPKKF 480 SHSTRRNRRQ VNKVLLETPE DEIDFQKISF RDLIIYHEHK EKLEKKEATT RQPATNQRTD 540 TVGEEIYNDG EESLADEQGR GTDDDETPDV VDMTSAYFNY HSFMDKTSRT KWSKHDTERF 600 YEAVRQFGTD FCMIQQLFPG RTRHQIKLKF KNEERHHPFR LSDAITNRAK DHSQFLSLIG 660 QLQEAANKAK HESNEDELTE NSGDEELGEL APETNEEEVA KPGEVEDTKM EEFVGEIHSP 720 LKADGSDDDD PHRWDEYKFD YW

Sequence ? help Back to Top

Protein Sequence Length: 742 aa Download sequence

MDPFDEILSD PGFTSRTGGR FQPKIKPRPK KQTLAPQLST VSQDKKGTTS DAKSCHDGRG  60
NTKSIKSSSQ LPVIEENKES EDDLLLATVR SDFIGCSHHT SVESAIMVDS TQLDLDSCGG  120
ILPSGSTIDG PVGVENPTDD SKNSGILNYS HSSASRAHEA TVLGQSGLGS IQPEDGHSND  180
GKIAGQNTDV FDELEWLDDF HNQPKNEADP SSLKQATISN EDGDLDTQRL EVEECGAGAN  240
ITRDIISSGT TTEQPACKYI PKPKMRVAGD SCTQISQPEI SNTLPPSPQV ISCDTRCMHE  300
ASIGTHSDGV LNDSSINFDD YSPVNQHIEA PVNVESLAYD SYGDILVDDF NSDDQDEMLR  360
EEGGKNGEED PLSQSNMSQQ QEMFPPVGEE IDHSKTSRKL RQQVSHQLDD PEDGVDDFPS  420
ERFSNYDIHG DGYKKNGRRG TKTKTKSLKP SSDNEKPARK RKEANKAVPD LQAEKRPKKF  480
SHSTRRNRRQ VNKVLLETPE DEIDFQKISF RDLIIYHEHK EKLEKKEATT RQPATNQRTD  540
TVGEEIYNDG EESLADEQGR GTDDDETPDV VDMTSAYFNY HSFMDKTSRT KWSKHDTERF  600
YEAVRQFGTD FCMIQQLFPG RTRHQIKLKF KNEERHHPFR LSDAITNRAK DHSQFLSLIG  660
QLQEAANKAK HESNEDELTE NSGDEELGEL APETNEEEVA KPGEVEDTKM EEFVGEIHSP  720
LKADGSDDDD PHRWDEYKFD YW

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G39160.1	5e-36	MYB_related family protein