PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022938378.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

CO-like

Protein Properties

Length: 345aa MW: 39198 Da PI: 6.9117

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022938378.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	28.8	2.6e-09	16	57	3	38
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 +r C+ + +k+++++C ++ +lC++C ++ H+ H+ XP_022938378.1 16 ARACDSCFRKRARWYCAADDAFLCQSCDSAVHSAnplarrHQ 57 578*****************************6567777776 PP
2	CCT	68	2.5e-23	289	332	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk++ XP_022938378.1 289 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRT 332 9*****************************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence
MSTKSSIANA VGGKTARACD SCFRKRARWY CAADDAFLCQ SCDSAVHSAN PLARRHQRLR 60 LNSPTSSNSK PPSPSWVSGF TRKPRTPRPP PRPKSDDLLS NPSFSLVPEA DDATSHEDNE 120 EDHLLYRVPT FDPFLPSDDL DLADFATDLE RQCFEMEGLG LVKVEDLHEQ QEADYCRAQH 180 PFEAQMDLMQ EPFELIPVMD VKNERQEDCA EETEDESKTQ RKGRVTLRLD CEAVIAAWGD 240 DKSPWTTGER PDLDPDQPWP HFMAFCGVRN GQGCGEYGMS TAAMGDGGRE ARVSRYREKR 300 RTRLFSKKIR YEVRKLNAEK RPRMKGRFVK RTAFTHPVLP IVSIK

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence

MSTKSSIANA VGGKTARACD SCFRKRARWY CAADDAFLCQ SCDSAVHSAN PLARRHQRLR  60
LNSPTSSNSK PPSPSWVSGF TRKPRTPRPP PRPKSDDLLS NPSFSLVPEA DDATSHEDNE  120
EDHLLYRVPT FDPFLPSDDL DLADFATDLE RQCFEMEGLG LVKVEDLHEQ QEADYCRAQH  180
PFEAQMDLMQ EPFELIPVMD VKNERQEDCA EETEDESKTQ RKGRVTLRLD CEAVIAAWGD  240
DKSPWTTGER PDLDPDQPWP HFMAFCGVRN GQGCGEYGMS TAAMGDGGRE ARVSRYREKR  300
RTRLFSKKIR YEVRKLNAEK RPRMKGRFVK RTAFTHPVLP IVSIK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	300	316	RRTRLFSKKIRYEVRKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25440.1	1e-35	CO-like family protein