PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022938071.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

C3H

Protein Properties

Length: 930aa MW: 102626 Da PI: 6.1635

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022938071.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.2	8.9e-06	550	570	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 Cr++ + G C+ Gd+CkF+H+ XP_022938071.1 550 YCRHYIK-GRCHEGDKCKFSHD 570 6****.***********7 PP

Sequence ? help Back to Top
Protein Sequence Length: 930 aa Download sequence
MEDARIEAPK LVESKLMFPP HRRSHLKSDT YRTLVRIFSP FCGSDDVSLA TEFDPQQLRH 60 AYTSHLKQST IESSGQLVDE DFVRPEIGDS AMEKVTVVED GMGMDSLVDG CFHESEVKMN 120 VIKDMSIVER NNNGSAEREL QGASSQENHC VHEESHRDKL EAANMVEGNK VLIDDNSSNK 180 TRSSDQTNCG NDQISPKKFT EEIVEHQQVM AEQDAVNRVQ NLSMTIFSSE GDNIGEASKH 240 KDNQENILPI VDKAMYQLTE TQPKESKPEG IVCEPYLEME KSHVSSFEVM EVEDGEQCSE 300 KVCGVDLSCL DEEMPFWANE LSKNSEDWAV SMEVDTSEVG HKIVSEDIQM EKCLIENEDI 360 EEGEICGDST HEISEDPAVL DEKHSSIQAN GEAKKPDSLF SDIVENATHE NKEESKQKKS 420 NLDACKHGSM DSVKMVTTII EYQNDFMLEE AGYTVKDSRP NRDADSFTAR ISNQVPHGQV 480 PSECATGRKE IASTEKETGA CNKKKRGSCT EGRKERKKIQ KRKKRAEKNR KLGVKRLKLL 540 PVTVPKPVVY CRHYIKGRCH EGDKCKFSHD TTPATKSVPC SYFARHSCMK GDDCPFDHQL 600 FKYPCSNFVS KGSCPRGDTC MFSHKILPQE QSNMQNLKTQ SKPPVIPDSF DSQRKSNISG 660 GTKQKPVTVT GPSYAGASCN RTPQGESLLK KTTGSLPTGI SFLSFGKSPD HSSQVKNDDV 720 ERRNSLTQSG LCSVENSSEI SRNIQPQRAP EGISILSFGR TSLKSNSENL ATPSSYNAAT 780 ITSGNQTPSS SKTGHDPSEL AKKVQTTTSK PTNFFSPMKE SMYVKPEGLS TIFSRLPGTS 840 MTTGQYSDSS ASSMNKGTPN SAQKALLSTL AFAAKYESMN KGKSSASAGS NDGNKEDRNE 900 KISGSLKNDQ AKASKLLDFL LGVGSKSNLK

Sequence ? help Back to Top

Protein Sequence Length: 930 aa Download sequence

MEDARIEAPK LVESKLMFPP HRRSHLKSDT YRTLVRIFSP FCGSDDVSLA TEFDPQQLRH  60
AYTSHLKQST IESSGQLVDE DFVRPEIGDS AMEKVTVVED GMGMDSLVDG CFHESEVKMN  120
VIKDMSIVER NNNGSAEREL QGASSQENHC VHEESHRDKL EAANMVEGNK VLIDDNSSNK  180
TRSSDQTNCG NDQISPKKFT EEIVEHQQVM AEQDAVNRVQ NLSMTIFSSE GDNIGEASKH  240
KDNQENILPI VDKAMYQLTE TQPKESKPEG IVCEPYLEME KSHVSSFEVM EVEDGEQCSE  300
KVCGVDLSCL DEEMPFWANE LSKNSEDWAV SMEVDTSEVG HKIVSEDIQM EKCLIENEDI  360
EEGEICGDST HEISEDPAVL DEKHSSIQAN GEAKKPDSLF SDIVENATHE NKEESKQKKS  420
NLDACKHGSM DSVKMVTTII EYQNDFMLEE AGYTVKDSRP NRDADSFTAR ISNQVPHGQV  480
PSECATGRKE IASTEKETGA CNKKKRGSCT EGRKERKKIQ KRKKRAEKNR KLGVKRLKLL  540
PVTVPKPVVY CRHYIKGRCH EGDKCKFSHD TTPATKSVPC SYFARHSCMK GDDCPFDHQL  600
FKYPCSNFVS KGSCPRGDTC MFSHKILPQE QSNMQNLKTQ SKPPVIPDSF DSQRKSNISG  660
GTKQKPVTVT GPSYAGASCN RTPQGESLLK KTTGSLPTGI SFLSFGKSPD HSSQVKNDDV  720
ERRNSLTQSG LCSVENSSEI SRNIQPQRAP EGISILSFGR TSLKSNSENL ATPSSYNAAT  780
ITSGNQTPSS SKTGHDPSEL AKKVQTTTSK PTNFFSPMKE SMYVKPEGLS TIFSRLPGTS  840
MTTGQYSDSS ASSMNKGTPN SAQKALLSTL AFAAKYESMN KGKSSASAGS NDGNKEDRNE  900
KISGSLKNDQ AKASKLLDFL LGVGSKSNLK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	503	525	KKKRGSCTEGRKERKKIQKRKKR
2	503	528	KKKRGSCTEGRKERKKIQKRKKRAEK
3	504	526	KKKRGSCTEGRKERKKIQKRKKR
4	516	538	RKKIQKRKKRAEKNRKLGVKRLK