PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022938049.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

AP2

Protein Properties

Length: 678aa MW: 72906.8 Da PI: 6.756

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022938049.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	46.6	8.8e-15	293	352	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + g ++ ++++lg ++ +e+Aa+a++ a++k++g XP_022938049.1 293 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqtRKgRQVYLGGYDKEEKAARAYDLAALKYWG 352 57*****************666664478446***********************98 PP
2	AP2	46.4	9.7e-15	395	446	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g XP_022938049.1 395 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDTAAIKFRG 446 57**************988532...5**********************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 678 aa Download sequence
MELHQISLTS NTKIYFLSIS FKIPSSFFSS MGSMNWLGFS LSPQEQHSDH HHGGGGGGSV 60 GGDGPFTSDN ISGSAVCFDN LPSSYGVYEP FHRNNHSQDW NNLKGLGSAQ SSDFSALIET 120 QQPPKLENFL GHHSFTDHDH AVVYTNASGN YMFQNCSLEL PSDPANCGGG KANDNGNNNG 180 SSIGLSMMKT WLRNQPAPPQ AVAKYGGNHD GAVRSGNITN AHSLSLSMNT GPPAAALPLL 240 TANGGGSGGG SGGESSSSDN KQAKSASAEM DGENGAVEAV PRKSIDTFGQ RTSIYRGVTR 300 HRWTGRYEAH LWDNSCRREG QTRKGRQVYL GGYDKEEKAA RAYDLAALKY WGSTTTTNFP 360 ISDYEKEMED MKHMTRQEFV ASLRRKSSGF SRGASIYRGV TRHHQHGRWQ ARIGRVAGNK 420 DLYLGTFSTQ EEAAEAYDTA AIKFRGLNAV TNFDMSRYDV KAILESNTLP IGGAAKRLKD 480 IVHSDIDPQR SDENISSHIS DGIITAAAAP YGGGGWPSLA FHHHPYAFHY PYAATQQRLW 540 CKQEHDATVA AADNFFPHGG AMDSMDHGVY SGGGSGDGYG GNFLISMAAG AEAGSSSSNN 600 NGGGLGEIGE VNLFGCSSNV DDPYHATRTT TNLYDYNNSS HQLPPPTTAL QQCNNWLPPA 660 RTVCHGGAPP PFTIWNDT

Sequence ? help Back to Top

Protein Sequence Length: 678 aa Download sequence

MELHQISLTS NTKIYFLSIS FKIPSSFFSS MGSMNWLGFS LSPQEQHSDH HHGGGGGGSV  60
GGDGPFTSDN ISGSAVCFDN LPSSYGVYEP FHRNNHSQDW NNLKGLGSAQ SSDFSALIET  120
QQPPKLENFL GHHSFTDHDH AVVYTNASGN YMFQNCSLEL PSDPANCGGG KANDNGNNNG  180
SSIGLSMMKT WLRNQPAPPQ AVAKYGGNHD GAVRSGNITN AHSLSLSMNT GPPAAALPLL  240
TANGGGSGGG SGGESSSSDN KQAKSASAEM DGENGAVEAV PRKSIDTFGQ RTSIYRGVTR  300
HRWTGRYEAH LWDNSCRREG QTRKGRQVYL GGYDKEEKAA RAYDLAALKY WGSTTTTNFP  360
ISDYEKEMED MKHMTRQEFV ASLRRKSSGF SRGASIYRGV TRHHQHGRWQ ARIGRVAGNK  420
DLYLGTFSTQ EEAAEAYDTA AIKFRGLNAV TNFDMSRYDV KAILESNTLP IGGAAKRLKD  480
IVHSDIDPQR SDENISSHIS DGIITAAAAP YGGGGWPSLA FHHHPYAFHY PYAATQQRLW  540
CKQEHDATVA AADNFFPHGG AMDSMDHGVY SGGGSGDGYG GNFLISMAAG AEAGSSSSNN  600
NGGGLGEIGE VNLFGCSSNV DDPYHATRTT TNLYDYNNSS HQLPPPTTAL QQCNNWLPPA  660
RTVCHGGAPP PFTIWNDT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51190.1	1e-131	AP2 family protein