PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022937467.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

C3H

Protein Properties

Length: 329aa MW: 36478 Da PI: 7.5966

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022937467.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24.5	4.8e-08	76	100	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+ C f G C+ G++C+FaHg XP_022937467.1 76 FKTRMCAKFKL-GLCRNGANCNFAHG 100 69*******.***********8 PP
2	zf-CCCH	30.9	4.5e-10	135	159	1	25
--S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaH 25 +k++lCr f+ + +C+yGdrC+F H XP_022937467.1 135 QKMKLCRKFYNGEECPYGDRCNFLH 159 5999*****66********** PP
3	zf-CCCH	42.2	1.3e-13	220	246	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+lC + tG+C++Gd+C+FaHg+ XP_022937467.1 220 WKTKLCTKWEVTGHCPFGDKCHFAHGQ 246 8************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence
MSFNDIRGSV IPPPLHPYGA SDATGCWSQY PRNDLFDTQS QFEPQLPPFK RARNSEENLS 60 RVQNGPVNKG INNIFFKTRM CAKFKLGLCR NGANCNFAHG AEDMRQPPPN WQEIVGIRED 120 DQSVSNWNDD QKIIQKMKLC RKFYNGEECP YGDRCNFLHE DPAKFRDDSG RFRESSAISI 180 GTTVTPLMNG NDSSYSEPSR AVSCSASASD SLRGNGNAFW KTKLCTKWEV TGHCPFGDKC 240 HFAHGQSELQ LSLGREGEVS NPALNINPVV VAMEASPSLA ASVATSPLPE GQAKPCLLKW 300 KGPKKINRIY ADWLDDLPLS PTSASKLEV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19360.1	4e-94	C3H family protein