PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_022937429.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
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Family | C3H | ||||||||
Protein Properties | Length: 481aa MW: 51827 Da PI: 8.3631 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 37.4 | 4.2e-12 | 49 | 73 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C +++rtG+C yG+rC+F+H++ XP_022937429.1 49 EADCIYYLRTGFCGYGSRCRFNHPR 73 789********************96 PP | |||||||
2 | zf-CCCH | 40 | 6.6e-13 | 95 | 119 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++lC++++rtG Ck+G++Ck++H++ XP_022937429.1 95 QPLCQYYMRTGMCKFGASCKYHHPQ 119 79*********************97 PP | |||||||
3 | zf-CCCH | 35.8 | 1.3e-11 | 140 | 165 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C++++++G+Ck+G++CkF+H++ XP_022937429.1 140 GEKECSYYLKNGQCKFGATCKFHHPE 165 6789********************96 PP | |||||||
4 | zf-CCCH | 38.9 | 1.5e-12 | 304 | 330 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++++rtG Ck+G++C+++H+p XP_022937429.1 304 PGQPECQYYMRTGDCKFGSSCRYHHPP 330 5789*********************97 PP | |||||||
5 | zf-CCCH | 35.5 | 1.7e-11 | 352 | 376 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++C +f++ G+Ck+G+ CkF H++ XP_022937429.1 352 APPCTHFMQRGICKFGPACKFDHSM 376 689********************85 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 481 aa Download sequence |
MKPYGQSMEG SQSDPSPEWT ASGPDTGHGE PVWPLGSRER ESYPERPEEA DCIYYLRTGF 60 CGYGSRCRFN HPRERSAVLG GSRTGGRDYP ERVGQPLCQY YMRTGMCKFG ASCKYHHPQQ 120 EMGSLSPVSL NFYGYPLRQG EKECSYYLKN GQCKFGATCK FHHPEPAGLQ FPAPSPVQVA 180 PLPAPMPPAP SVYPPVQSPS AHSSQQYGVI LARSPMLSSP YVPSPYGPML VSPGVVQFPS 240 WNPYQAPMSP VASPSAQPSV GSGQLYGMAQ VSPSAPTYAG SYQPMPSAGA SSTSQKEHSF 300 PERPGQPECQ YYMRTGDCKF GSSCRYHHPP ELVNSRSSVV LSQIGLPLRP GAPPCTHFMQ 360 RGICKFGPAC KFDHSMERLS YSPSASSLAD MPVAPYPVGS VVGTLAPSFS SSELRPEHFS 420 GPRMDSNPSR MSSSMSTSSG LAGSTTSRTE MHSHSNVQRS SQSSGLSASS TSSTTSVEGR 480 T |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18550.1 | 1e-133 | C3H family protein |