PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022937122.1
Organism
Cucurbita moschata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family GRAS
Protein Properties Length: 552aa    MW: 61662.6 Da    PI: 4.7555
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022937122.1genomeNCBIView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS4232.4e-1291825522374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                     +e LlecA a+s++++ +a+a++++l+ ++s +gdp qR+aay++e+Laarl+ s++ lykal+++e +   ss++laa+++++ev+P++kf+++
  XP_022937122.1 182 REMLLECAFAISEDNFDEASAMIEQLRGMVSVQGDPSQRIAAYMVEGLAARLLASGKCLYKALRCKEPP---SSDRLAAMQILFEVCPCFKFGFM 273
                     578*****************************************************************9...9********************** PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledl 189
                     +aN aI ea++ e+r+HiiDfd+sqG+Q+++L+q La++p+++p+lR+Tgv++pes+      l+++g+rL+++A++l+vpfef++ +a++++d+
  XP_022937122.1 274 AANCAIIEAAKDEKRIHIIDFDVSQGTQYINLIQMLATQPGKAPHLRLTGVDDPESVhrPVGGLKHIGQRLEQLAKALRVPFEFQA-IASNTSDV 367
                     *******************************************************9988999************************.7******* PP

            GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284
                     ++++L+ ++gEa++Vn+++ lh+++desvs+ + rd++L++vk+l+Pk+v+vveq++++n+++F+ rf+e+ +y++a++d+l+a+lpr+s++ri+
  XP_022937122.1 368 TPSMLASRHGEAVIVNFAFLLHHMPDESVSTVNLRDKLLRMVKNLNPKLVTVVEQDMNTNTTPFFSRFVETYNYFAAVYDTLDATLPRDSQDRIN 462
                     *********************************************************************************************** PP

            GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     vEr++l+++ivn+vaceg++r+er e ++kWr+r+++aGF++ ++s+++++ ++ l+ ++ ++  ++ ee g++ +gW++++L+ +S Wr
  XP_022937122.1 463 VERQCLAKDIVNIVACEGEDRVERYEVAGKWRARMTMAGFSSCTMSQNVTDPIRKLIGEYCERRLKMYEEMGTVHFGWEEKSLIITSTWR 552
                     *************************************************************999*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 552 aa     Download sequence    
MSLVRPSDPS PLSYGSRKLY SLNGTKNAPD LSAQRFGSEM HRSESYEKYF LDFPIEELSI  60
SGVSGISNNS FHPNAASYGR TCDSDSACLE ITSPEQLDFG DDQVRLKLQE LERDLLGEPD  120
AADYDVEMLA NGQAMEIDSE WANSIKDALL HDSPNESSST DSNFSTTGSN KDASQMSSQN  180
PREMLLECAF AISEDNFDEA SAMIEQLRGM VSVQGDPSQR IAAYMVEGLA ARLLASGKCL  240
YKALRCKEPP SSDRLAAMQI LFEVCPCFKF GFMAANCAII EAAKDEKRIH IIDFDVSQGT  300
QYINLIQMLA TQPGKAPHLR LTGVDDPESV HRPVGGLKHI GQRLEQLAKA LRVPFEFQAI  360
ASNTSDVTPS MLASRHGEAV IVNFAFLLHH MPDESVSTVN LRDKLLRMVK NLNPKLVTVV  420
EQDMNTNTTP FFSRFVETYN YFAAVYDTLD ATLPRDSQDR INVERQCLAK DIVNIVACEG  480
EDRVERYEVA GKWRARMTMA GFSSCTMSQN VTDPIRKLIG EYCERRLKMY EEMGTVHFGW  540
EEKSLIITST WR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21450.10.0GRAS family protein