PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022936859.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

Nin-like

Protein Properties

Length: 916aa MW: 101993 Da PI: 6.6305

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022936859.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.7	5.6e-29	593	642	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 k+i+l++l++yF++++kdAAk++gvc+T+LKriCRq+GIkRWP+Rkik++ XP_022936859.1 593 KTITLQVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGIKRWPSRKIKKV 642 89**********************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 916 aa Download sequence
MEDCMLSPAT MLDAPAEAAM DLDYMDGLLL EGCWLETAEG TEFLHPSTAS FGANLDPLIA 60 WPATDMNGDF HMSQITRANQ EEPRRILTDE ASMGRGRVDM EQEGCSGQSE NHGFEGSELC 120 RRLWIGPGDH LGSASSVMEK LIRAVGYIKD FVRDKDVLVQ VWVPINRGGR SVLITNDLPF 180 SQNSSCTRLT KYRDVSVKYE FTADDDSKNA LGLPGRVFSR KVPEWTPDVR FFRSDEYPRV 240 NHAHEHDVRG TVALPIFEQG SKNCLGVIEV VMVTQQIKYG SELESVCKAL EAVKLRSSDV 300 IGHPDKKVFN RSNEAVLLEI QNTLKSACET HGLPLAQTWA SCIQQNREGC RHSDENYSCC 360 VSTVDRACFV ADPRVQEFHE ACSEHHLLKG EGIVGMAFKS NEPCFSSDIT SFCNTEYPLS 420 HHAKLFGLHA AVAIRLRCIY ISKTDFVLEF FLPVDCIDPE EQRVLLTSLS TIIQRSCRSL 480 RLVNDKECRE ENMQQSCRRS KVEHHQLEMS HPTNSLLTSS VQNIQQQSGF VSLFQDGKTS 540 EILSSSGYQH HELNYNLNGV VEDSEECATV GNSCFSDTGL GRTGEKRRTK VDKTITLQVL 600 RQYFAGSLKD AAKSIGVCPT TLKRICRQHG IKRWPSRKIK KVGHSLQKLQ LVIDSVEGAS 660 GAFQIGSLYS NFQDLASPNL SGSGSGPVLS AKMGDCMKTS SNPNEVGMSN LQGGGASKSP 720 SSSCSQSSSS NQCFSSRSHK NVGHWNKGGS EDQMGGGENP CDGELKRVKS EVEIHVSIME 780 GSNIPRRSQS CKSLCKHPAT ECLVHTAKEG DGMAERVEVQ KVKVSYGEEK IRFRVHNQWR 840 YEELLNEVGK RFSISDMTKF DLKYLDDESE WVLLTSDTDL QECFHVYKSC RIQTIRLLVQ 900 ESRRHKRNCV ASGGFS

Sequence ? help Back to Top

Protein Sequence Length: 916 aa Download sequence

MEDCMLSPAT MLDAPAEAAM DLDYMDGLLL EGCWLETAEG TEFLHPSTAS FGANLDPLIA  60
WPATDMNGDF HMSQITRANQ EEPRRILTDE ASMGRGRVDM EQEGCSGQSE NHGFEGSELC  120
RRLWIGPGDH LGSASSVMEK LIRAVGYIKD FVRDKDVLVQ VWVPINRGGR SVLITNDLPF  180
SQNSSCTRLT KYRDVSVKYE FTADDDSKNA LGLPGRVFSR KVPEWTPDVR FFRSDEYPRV  240
NHAHEHDVRG TVALPIFEQG SKNCLGVIEV VMVTQQIKYG SELESVCKAL EAVKLRSSDV  300
IGHPDKKVFN RSNEAVLLEI QNTLKSACET HGLPLAQTWA SCIQQNREGC RHSDENYSCC  360
VSTVDRACFV ADPRVQEFHE ACSEHHLLKG EGIVGMAFKS NEPCFSSDIT SFCNTEYPLS  420
HHAKLFGLHA AVAIRLRCIY ISKTDFVLEF FLPVDCIDPE EQRVLLTSLS TIIQRSCRSL  480
RLVNDKECRE ENMQQSCRRS KVEHHQLEMS HPTNSLLTSS VQNIQQQSGF VSLFQDGKTS  540
EILSSSGYQH HELNYNLNGV VEDSEECATV GNSCFSDTGL GRTGEKRRTK VDKTITLQVL  600
RQYFAGSLKD AAKSIGVCPT TLKRICRQHG IKRWPSRKIK KVGHSLQKLQ LVIDSVEGAS  660
GAFQIGSLYS NFQDLASPNL SGSGSGPVLS AKMGDCMKTS SNPNEVGMSN LQGGGASKSP  720
SSSCSQSSSS NQCFSSRSHK NVGHWNKGGS EDQMGGGENP CDGELKRVKS EVEIHVSIME  780
GSNIPRRSQS CKSLCKHPAT ECLVHTAKEG DGMAERVEVQ KVKVSYGEEK IRFRVHNQWR  840
YEELLNEVGK RFSISDMTKF DLKYLDDESE WVLLTSDTDL QECFHVYKSC RIQTIRLLVQ  900
ESRRHKRNCV ASGGFS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20640.2	0.0	Nin-like family protein