PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022936402.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

C2H2

Protein Properties

Length: 411aa MW: 44814 Da PI: 9.9368

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022936402.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	19.3	3.1e-06	171	193	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp+Cg++F+ +++L+ H+ + H XP_022936402.1 171 PCPHCGEVFPKPETLELHQLVrH 193 5******************9888 PP

Sequence ? help Back to Top
Protein Sequence Length: 411 aa Download sequence
MALLTSHHNK RRKRHKNPSP PPPPPPSAQS SWDQIKSLLT CKQIETSRVH EPVKRSPAYS 60 KLGSSCSSIC SFRDVVHGNA KVVHRADNSP ESSSVGQETR LLHRKAPNGS SSRSLTAPTP 120 GRTKHAASAS ASASYSSSSR GIQLRKLSGC YECHTIVDPT RYPIPRSSIR PCPHCGEVFP 180 KPETLELHQL VRHAVSELGP DDSGRNIVEI IFKSSWLKKD RPICKIQRIL KVHNTQRTIQ 240 RFEDCRDAVK TRALNSTKKN PRCAADGNEL LRFHCSALLC DLGSRGSTGL CGSIPGCGVC 300 TVIRHGFQCK PGGVPGVQTT ASSGRAHDSF GCSDGRRRAM LVCRVIAGRV KRMAEDGAGT 360 TTTEEENMSA AGSYDSVSRH SGMYSNLEEL IIFNPKAILP CFVVIYEALQ T

Sequence ? help Back to Top

Protein Sequence Length: 411 aa Download sequence

MALLTSHHNK RRKRHKNPSP PPPPPPSAQS SWDQIKSLLT CKQIETSRVH EPVKRSPAYS  60
KLGSSCSSIC SFRDVVHGNA KVVHRADNSP ESSSVGQETR LLHRKAPNGS SSRSLTAPTP  120
GRTKHAASAS ASASYSSSSR GIQLRKLSGC YECHTIVDPT RYPIPRSSIR PCPHCGEVFP  180
KPETLELHQL VRHAVSELGP DDSGRNIVEI IFKSSWLKKD RPICKIQRIL KVHNTQRTIQ  240
RFEDCRDAVK TRALNSTKKN PRCAADGNEL LRFHCSALLC DLGSRGSTGL CGSIPGCGVC  300
TVIRHGFQCK PGGVPGVQTT ASSGRAHDSF GCSDGRRRAM LVCRVIAGRV KRMAEDGAGT  360
TTTEEENMSA AGSYDSVSRH SGMYSNLEEL IIFNPKAILP CFVVIYEALQ T

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75710.1	1e-154	C2H2 family protein