PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_022935423.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 706aa MW: 76995.2 Da PI: 6.4566 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 21 | 5.8e-07 | 277 | 297 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C++f++ G C++Gd C +aHg XP_022935423.1 277 TCPDFRK-GACRRGDMCEYAHG 297 6******.*************9 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 706 aa Download sequence |
MNSLTVETED AFSSLLELAA NDDVDAFKRS IERDLSGIDE IGFWYGRLRG SKQMTNEQRT 60 PLMVAATYGS IEVLKLILSL SCADVNRAVG LDRSTALHCA ASGGAANAVD VVKLLLAAGA 120 DPNMVDGNGH RPVDVVVAPL RHAELKSTLT ELLKTNGFSG DGNLDALTGA RNSLSPRPSS 180 PLNAPSFTSE LVSSPTKSKL SDFSMYPASE KKEYPVDLSL PDIKNSIYST DEFRMYSFKV 240 RPCSRAYSHD WTECPFVHPG ENARRRDPRK FHYSCVTCPD FRKGACRRGD MCEYAHGVFE 300 CWLHPAQYRT RLCKDGTNCS RRVCFFAHTT EELRPLYVST GSAVPSPRSC TSGASAMDYT 360 TVMNLLPGSP SSVPVMSPSP FTPPMSPSAN GMSHPSVAWP QPNVPALLLP GSNIQSSRLR 420 SSLSARDIPV EDFDYLSDFE LQQQQQQLVN DLNCLSQPPL SSNSLSRSGR LKTMTPSNLD 480 DLFSAESSSP RYSDQALASA VFSPTHKSAV INQFQQQQNM LSPINTNFSP KNVDHPLLQA 540 SFGVPSSGRM SPRNLEPPIS PVGSRLSMLA QREKQQQFRS LSSRELGANS ASIVGSPASS 600 WSKWGPSNGR PDWAVNADEM GKLRRSSSFE LGNNGEEPDL SWVQSLVKES PTEIKEKQAH 660 PNLGGDSFVS SGESSNVNSQ MESVDHAALG AWLEQMQLDH LVALQN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G41900.1 | 0.0 | C3H family protein |