PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022935073.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

AP2

Protein Properties

Length: 498aa MW: 54797.9 Da PI: 6.5134

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022935073.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	53.4	6.3e-17	149	198	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g XP_022935073.1 149 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 198 78*****************......55**********************997 PP
2	AP2	42.9	1.2e-13	275	325	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+++ eAa+a+++a++k +g XP_022935073.1 275 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEIEAARAYDKAALKCNG 325 89******.7**5553..2.26******99********99876 PP

Sequence ? help Back to Top
Protein Sequence Length: 498 aa Download sequence
MLDLNLQVVS SDSVELVTER LFQFPPIRME SAGSFNGDLS ASTTGDEDSS SNADEAFPFA 60 FGKDCAVQEN LTAKSLCISD NQRDQTMELF PLTGGLSSGS SSQKQWLEVS PPEFHYWGGA 120 LERRITAPPG QQQHQPMRKN RRGPRSRSSQ YRGVTFYRRT GRWESHIWDC GKQVYLGGFD 180 TAHAAARAYD RAAIKFRGVD ADINFNVSDY DEDIKQVGLA KLILITVRTS NSFSNAIDEE 240 LYSWLPLMSQ MSNFTKEEFV HILRRHSTGF SRGSSKYRGV TLHKCGRWEA RMGQFLGKKY 300 IYLGLFDSEI EAARAYDKAA LKCNGKEAVT NFEPSSYVAE MASEAAGTAD NNQILDLNLG 360 IAPPNLCEAQ SESIAMFERR AMPENSVSAA IRSSHSEPYS FAVPSNYHSP WSVSNSSFFP 420 NSRERATEMR MGVGVGVGSW EWQIHGHPSG TTSVPLFSAA ASSGFPSSSS SSSSSTAIPS 480 ASSGVGETHF PAIFYCRS

Sequence ? help Back to Top

Protein Sequence Length: 498 aa Download sequence

MLDLNLQVVS SDSVELVTER LFQFPPIRME SAGSFNGDLS ASTTGDEDSS SNADEAFPFA  60
FGKDCAVQEN LTAKSLCISD NQRDQTMELF PLTGGLSSGS SSQKQWLEVS PPEFHYWGGA  120
LERRITAPPG QQQHQPMRKN RRGPRSRSSQ YRGVTFYRRT GRWESHIWDC GKQVYLGGFD  180
TAHAAARAYD RAAIKFRGVD ADINFNVSDY DEDIKQVGLA KLILITVRTS NSFSNAIDEE  240
LYSWLPLMSQ MSNFTKEEFV HILRRHSTGF SRGSSKYRGV TLHKCGRWEA RMGQFLGKKY  300
IYLGLFDSEI EAARAYDKAA LKCNGKEAVT NFEPSSYVAE MASEAAGTAD NNQILDLNLG  360
IAPPNLCEAQ SESIAMFERR AMPENSVSAA IRSSHSEPYS FAVPSNYHSP WSVSNSSFFP  420
NSRERATEMR MGVGVGVGSW EWQIHGHPSG TTSVPLFSAA ASSGFPSSSS SSSSSTAIPS  480
ASSGVGETHF PAIFYCRS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36920.1	5e-91	AP2 family protein