PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022934409.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

AP2

Protein Properties

Length: 396aa MW: 45107.3 Da PI: 8.2863

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022934409.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	47.9	3.2e-15	69	128	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+++GV++++++gr++A+++d s+n k+ k+++lg ++ +e Aa+a++ a++k++g XP_022934409.1 69 SRFRGVSRHRWTGRFEAHLWDkLSWNMtqkKKgKQVYLGAYDEEESAARAYDLAALKYWG 128 789****************888865666447**********************987 PP
2	AP2	56.8	5.7e-18	171	222	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I ++ +k+ +lg++gt eeAa+a++ a+ +++g XP_022934409.1 171 SKYRGVARHHHNGRWEARIGRVYG---NKYLYLGTYGTQEEAARAYDMAAIEYRG 222 89**99*******99654...4***********************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 396 aa Download sequence
MEAAALVLKN EENLRICWTG GQAQAIRRVK RRRREPAAAA AAAADQTNKQ QSVKQQSDQG 60 PTTTMKRSSR FRGVSRHRWT GRFEAHLWDK LSWNMTQKKK GKQVYLGAYD EEESAARAYD 120 LAALKYWGVT TITNFPVSEY EKEIETMQTM TKEEYLASLR RKSSGFSRGV SKYRGVARHH 180 HNGRWEARIG RVYGNKYLYL GTYGTQEEAA RAYDMAAIEY RGINAVTNFD WSNYMAWLKP 240 PPVPPAALND VHTTSNPDKE LCNSRSIPVE ETSMFENNHY DSDLFHSLQK QDLLESCSTP 300 INGYAKSSSP SALDLLLRSS FFKKLVETNS SLSVDDADNG EETKTHMQLN SVFDEFGDVF 360 GDRLTDEQFV CSSNKDLQES ELHSYFNGMF HRFKAA

Sequence ? help Back to Top

Protein Sequence Length: 396 aa Download sequence

MEAAALVLKN EENLRICWTG GQAQAIRRVK RRRREPAAAA AAAADQTNKQ QSVKQQSDQG  60
PTTTMKRSSR FRGVSRHRWT GRFEAHLWDK LSWNMTQKKK GKQVYLGAYD EEESAARAYD  120
LAALKYWGVT TITNFPVSEY EKEIETMQTM TKEEYLASLR RKSSGFSRGV SKYRGVARHH  180
HNGRWEARIG RVYGNKYLYL GTYGTQEEAA RAYDMAAIEY RGINAVTNFD WSNYMAWLKP  240
PPVPPAALND VHTTSNPDKE LCNSRSIPVE ETSMFENNHY DSDLFHSLQK QDLLESCSTP  300
INGYAKSSSP SALDLLLRSS FFKKLVETNS SLSVDDADNG EETKTHMQLN SVFDEFGDVF  360
GDRLTDEQFV CSSNKDLQES ELHSYFNGMF HRFKAA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	27	35	RRVKRRRRE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54320.3	1e-94	AP2 family protein