PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022934108.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

C2H2

Protein Properties

Length: 481aa MW: 52405.9 Da PI: 9.9032

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022934108.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.2	2.9e-05	66	88	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H XP_022934108.1 66 FICEICNKGFQRDQNLQLHRRGH 88 89*******************88 PP
2	zf-C2H2	12.2	0.00056	143	165	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H +t+ XP_022934108.1 143 WKCDKCSKKYAVQSDWKAHSKTC 165 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 481 aa Download sequence
MSSNPFSLLS STPTPFAHHP DANPSPNPKP KPSAAAKKKR NLPGTPDPDA EVVALSPKSL 60 MATNRFICEI CNKGFQRDQN LQLHRRGHNL PWKLRQRTNK EPIKKKVYIC PEKTCVHHDP 120 SRALGDLTGV KKHFSRKHGE KKWKCDKCSK KYAVQSDWKA HSKTCGTREY KCDCGTLFSR 180 KDSFITHRAF CDALAEESAR ITTVSATNIL NNLRNDSVLL HQQDQSLIDH QTNNLQTLGD 240 VPALSQFTHS DHFLRDFEDH QHKNRSPFSL WLNNSNNISN FYGASSSSSN LFGSIAETGL 300 SMLPVFEKED VERKGSLPKA TSSAAALLSG QSSSVVSSSP MSATALLQKA ALMGSTRSST 360 NNNSPLIDAG AFGVMNSSSL SSSSSSNAVS LNSLNKSRSM SMADSVQMVG TNSDLSSNIL 420 SQLLMPLNNG NNSMKSNDQT RDFLGVGGNG EAPRPPFLPP ELAKFTAINS TMGLSQFAAN 480 H

Sequence ? help Back to Top

Protein Sequence Length: 481 aa Download sequence

MSSNPFSLLS STPTPFAHHP DANPSPNPKP KPSAAAKKKR NLPGTPDPDA EVVALSPKSL  60
MATNRFICEI CNKGFQRDQN LQLHRRGHNL PWKLRQRTNK EPIKKKVYIC PEKTCVHHDP  120
SRALGDLTGV KKHFSRKHGE KKWKCDKCSK KYAVQSDWKA HSKTCGTREY KCDCGTLFSR  180
KDSFITHRAF CDALAEESAR ITTVSATNIL NNLRNDSVLL HQQDQSLIDH QTNNLQTLGD  240
VPALSQFTHS DHFLRDFEDH QHKNRSPFSL WLNNSNNISN FYGASSSSSN LFGSIAETGL  300
SMLPVFEKED VERKGSLPKA TSSAAALLSG QSSSVVSSSP MSATALLQKA ALMGSTRSST  360
NNNSPLIDAG AFGVMNSSSL SSSSSSNAVS LNSLNKSRSM SMADSVQMVG TNSDLSSNIL  420
SQLLMPLNNG NNSMKSNDQT RDFLGVGGNG EAPRPPFLPP ELAKFTAINS TMGLSQFAAN  480
H

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G45260.1	1e-101	C2H2 family protein