PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_022934056.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
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Family | C3H | ||||||||
Protein Properties | Length: 295aa MW: 31311.2 Da PI: 9.2659 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 25.3 | 2.6e-08 | 100 | 125 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+ C+ + t Ck+Gd+C+FaHg+ XP_022934056.1 100 KTRMCNKYNSTEGCKFGDKCHFAHGE 125 89**********************96 PP | |||||||
2 | zf-CCCH | 31.7 | 2.6e-10 | 262 | 286 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt+lC++f + G C +G+rC+FaHg XP_022934056.1 262 YKTKLCDNFGK-GSCTFGERCHFAHG 286 9**********.*************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 295 aa Download sequence |
MDYRKREKPE VGLNANGGFK KSKQEMEYLS TGVASKSKPC TKFYSTTGCQ FGEGCHFLHY 60 VPGGYNAVAQ MMNLEPAPSA PRNMAAPHPM SNGSTTQDAK TRMCNKYNST EGCKFGDKCH 120 FAHGEWELGR PSAPSHEDPR ATGYFPSRLP SRMNAAPAGP AASFGASATA KISVDASLAG 180 AIIGKGGVNS KQICRQTGAK LSIRDHESDP NLRNIELEGT FDQIKEASAM VRELIATVSM 240 AGPSKAATRT TGGPAAPAGS NYKTKLCDNF GKGSCTFGER CHFAHGSAEL RKSGA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06770.1 | 1e-56 | C3H family protein |