PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022933779.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family C3H
Protein Properties Length: 403aa    MW: 44092.9 Da    PI: 8.0144
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022933779.1genomeNCBIView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.71.4e-114874127
                    --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                    ++++ C+++ rtG C++G++C+F+H+p
  XP_022933779.1 48 PGEPDCSYYIRTGLCRFGATCRFNHPP 74
                    5789*********************97 PP

2zf-CCCH391.4e-12100124327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     +++C+++++tGtCk+G++CkF+H++
  XP_022933779.1 100 QPECQYYLKTGTCKFGATCKFHHPR 124
                     799********************96 PP

3zf-CCCH36.29.9e-12146170327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     + +C +++rtG+Ck+G++CkF+H++
  XP_022933779.1 146 ETECAYYLRTGQCKFGNTCKFHHPQ 170
                     568********************97 PP

4zf-CCCH382.7e-12264290127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     +++++C+f+++tG Ck+G+ C+F+H++
  XP_022933779.1 264 PGQPECQFYMKTGDCKFGAVCRFHHPR 290
                     5789*********************96 PP

5zf-CCCH40.35.3e-13310336127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++lC f++r+G+Ck+G++CkF H++
  XP_022933779.1 310 PGEPLCIFYSRYGICKFGPSCKFDHPM 336
                     589**********************95 PP

Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    
MEYDSGIPMS VTEGHSSALT PSLREDALWQ MNLGSGEIMG SGSYPVRPGE PDCSYYIRTG  60
LCRFGATCRF NHPPNRELVL SKNAIATARM KGEFPERIGQ PECQYYLKTG TCKFGATCKF  120
HHPRDKAGIA GRVALNILGY PLRPSETECA YYLRTGQCKF GNTCKFHHPQ PTNMMVSLRG  180
SPIYPTVQSP TPGQQSYPGG STNWSRASFI PSPRWQGPSS YASLILPQGV LSVPGWNTFN  240
DQLGSVSSSE SPQQTRENVF PERPGQPECQ FYMKTGDCKF GAVCRFHHPR ERVIPAPDCV  300
LSPIGLPLRP GEPLCIFYSR YGICKFGPSC KFDHPMGIFA YNLSAASTPN APVQHLFGTS  360
SGTTALSLSS EGLVEAGSAK ARRLSITETR EMSSDDENIE AEG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-180C3H family protein