PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022933778.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

C3H

Protein Properties

Length: 404aa MW: 44174.9 Da PI: 7.8853

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022933778.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	35.7	1.4e-11	54	80	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+++ rtG C++G++C+F+H+p XP_022933778.1 54 PGEPDCSYYIRTGLCRFGATCRFNHPP 80 5789*********************97 PP
2	zf-CCCH	39	1.4e-12	101	125	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tGtCk+G++CkF+H++ XP_022933778.1 101 QPECQYYLKTGTCKFGATCKFHHPR 125 799********************96 PP
3	zf-CCCH	36.2	9.9e-12	147	171	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 + +C +++rtG+Ck+G++CkF+H++ XP_022933778.1 147 ETECAYYLRTGQCKFGNTCKFHHPQ 171 568********************97 PP
4	zf-CCCH	38	2.7e-12	265	291	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+f+++tG Ck+G+ C+F+H++ XP_022933778.1 265 PGQPECQFYMKTGDCKFGAVCRFHHPR 291 5789*********************96 PP
5	zf-CCCH	40.3	5.3e-13	311	337	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++lC f++r+G+Ck+G++CkF H++ XP_022933778.1 311 PGEPLCIFYSRYGICKFGPSCKFDHPM 337 589**********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 404 aa Download sequence
MEYDSGIPMS VTEGHSSALT PSLREGSFAN FDALWQMNLG SGEIMGSGSY PVRPGEPDCS 60 YYIRTGLCRF GATCRFNHPP NRELAIATAR MKGEFPERIG QPECQYYLKT GTCKFGATCK 120 FHHPRDKAGI AGRVALNILG YPLRPSETEC AYYLRTGQCK FGNTCKFHHP QPTNMMVSLR 180 GSPIYPTVQS PTPGQQSYPG GSTNWSRASF IPSPRWQGPS SYASLILPQG VLSVPGWNTF 240 NDQLGSVSSS ESPQQTRENV FPERPGQPEC QFYMKTGDCK FGAVCRFHHP RERVIPAPDC 300 VLSPIGLPLR PGEPLCIFYS RYGICKFGPS CKFDHPMGIF AYNLSAASTP NAPVQHLFGT 360 SSGTTALSLS SEGLVEAGSA KARRLSITET REMSSDDENI EAEG

Sequence ? help Back to Top

Protein Sequence Length: 404 aa Download sequence

MEYDSGIPMS VTEGHSSALT PSLREGSFAN FDALWQMNLG SGEIMGSGSY PVRPGEPDCS  60
YYIRTGLCRF GATCRFNHPP NRELAIATAR MKGEFPERIG QPECQYYLKT GTCKFGATCK  120
FHHPRDKAGI AGRVALNILG YPLRPSETEC AYYLRTGQCK FGNTCKFHHP QPTNMMVSLR  180
GSPIYPTVQS PTPGQQSYPG GSTNWSRASF IPSPRWQGPS SYASLILPQG VLSVPGWNTF  240
NDQLGSVSSS ESPQQTRENV FPERPGQPEC QFYMKTGDCK FGAVCRFHHP RERVIPAPDC  300
VLSPIGLPLR PGEPLCIFYS RYGICKFGPS CKFDHPMGIF AYNLSAASTP NAPVQHLFGT  360
SSGTTALSLS SEGLVEAGSA KARRLSITET REMSSDDENI EAEG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02830.1	1e-179	C3H family protein