PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_022933776.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
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Family | C3H | ||||||||
Protein Properties | Length: 409aa MW: 44716.5 Da PI: 8.0144 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 35.7 | 1.4e-11 | 54 | 80 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+++ rtG C++G++C+F+H+p XP_022933776.1 54 PGEPDCSYYIRTGLCRFGATCRFNHPP 80 5789*********************97 PP | |||||||
2 | zf-CCCH | 38.9 | 1.4e-12 | 106 | 130 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tGtCk+G++CkF+H++ XP_022933776.1 106 QPECQYYLKTGTCKFGATCKFHHPR 130 799********************96 PP | |||||||
3 | zf-CCCH | 36.2 | 1e-11 | 152 | 176 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 + +C +++rtG+Ck+G++CkF+H++ XP_022933776.1 152 ETECAYYLRTGQCKFGNTCKFHHPQ 176 568********************97 PP | |||||||
4 | zf-CCCH | 38 | 2.7e-12 | 270 | 296 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+f+++tG Ck+G+ C+F+H++ XP_022933776.1 270 PGQPECQFYMKTGDCKFGAVCRFHHPR 296 5789*********************96 PP | |||||||
5 | zf-CCCH | 40.3 | 5.4e-13 | 316 | 342 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++lC f++r+G+Ck+G++CkF H++ XP_022933776.1 316 PGEPLCIFYSRYGICKFGPSCKFDHPM 342 589**********************95 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 409 aa Download sequence |
MEYDSGIPMS VTEGHSSALT PSLREGSFAN FDALWQMNLG SGEIMGSGSY PVRPGEPDCS 60 YYIRTGLCRF GATCRFNHPP NRELVLSKNA IATARMKGEF PERIGQPECQ YYLKTGTCKF 120 GATCKFHHPR DKAGIAGRVA LNILGYPLRP SETECAYYLR TGQCKFGNTC KFHHPQPTNM 180 MVSLRGSPIY PTVQSPTPGQ QSYPGGSTNW SRASFIPSPR WQGPSSYASL ILPQGVLSVP 240 GWNTFNDQLG SVSSSESPQQ TRENVFPERP GQPECQFYMK TGDCKFGAVC RFHHPRERVI 300 PAPDCVLSPI GLPLRPGEPL CIFYSRYGIC KFGPSCKFDH PMGIFAYNLS AASTPNAPVQ 360 HLFGTSSGTT ALSLSSEGLV EAGSAKARRL SITETREMSS DDENIEAEG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02830.1 | 1e-178 | C3H family protein |