PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022933457.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

C3H

Protein Properties

Length: 528aa MW: 59803.8 Da PI: 8.0286

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022933457.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.7	3.1e-06	71	91	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C f++ G+C+ Gd+C+F Hg XP_022933457.1 71 PCYFYFN-GFCSKGDTCTFLHG 91 7999999.*************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 528 aa Download sequence
MIMRFLDSNG FDCEYRHSEI ARLNPRDCYY WLAGNCLNAA CSFRHPPMDG AAGKVFESSQ 60 SSVPVNKTNI PCYFYFNGFC SKGDTCTFLH GTDITVAARS TKIGNTSSSE DKTASSHKNG 120 LASTDADAFL QSSKKVVGPT IEGTFRESRS QPSAENVSIR SACAKISLPE CEKVAVDEPV 180 SLPLTEGSKY SRSHVHVVAD QSYEEPMVDS SEDENPLESS TGFDVVVGHE LENLDSDDDS 240 EYLLSTNLEQ RELDTELCRD DDEDYIAYEP MHSDLEVLYE REMHTYDHLE RNSILSNDRN 300 VISCSRGKLI KSLFTRKRKL TLMNIDSEEW NRTDLRSYLQ RDGVSGNGSI IGLSRRRNGM 360 SRRTSRNFAK PWKDGLYHPT LGRRLPLHVG KVSGESLSED LTFSNSISGY RSFRHSRQYK 420 PYRYYDGYRF ARRQHPLSNI SRRPVSREPV PRDHGFNLKS SVPFKGPKTL SQIKDEKRKV 480 EENRGLSMKK RHSIGCASSS ADFRGPKPLS DILKDKRKVE KLVKEIIT

Sequence ? help Back to Top

Protein Sequence Length: 528 aa Download sequence

MIMRFLDSNG FDCEYRHSEI ARLNPRDCYY WLAGNCLNAA CSFRHPPMDG AAGKVFESSQ  60
SSVPVNKTNI PCYFYFNGFC SKGDTCTFLH GTDITVAARS TKIGNTSSSE DKTASSHKNG  120
LASTDADAFL QSSKKVVGPT IEGTFRESRS QPSAENVSIR SACAKISLPE CEKVAVDEPV  180
SLPLTEGSKY SRSHVHVVAD QSYEEPMVDS SEDENPLESS TGFDVVVGHE LENLDSDDDS  240
EYLLSTNLEQ RELDTELCRD DDEDYIAYEP MHSDLEVLYE REMHTYDHLE RNSILSNDRN  300
VISCSRGKLI KSLFTRKRKL TLMNIDSEEW NRTDLRSYLQ RDGVSGNGSI IGLSRRRNGM  360
SRRTSRNFAK PWKDGLYHPT LGRRLPLHVG KVSGESLSED LTFSNSISGY RSFRHSRQYK  420
PYRYYDGYRF ARRQHPLSNI SRRPVSREPV PRDHGFNLKS SVPFKGPKTL SQIKDEKRKV  480
EENRGLSMKK RHSIGCASSS ADFRGPKPLS DILKDKRKVE KLVKEIIT