PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022933273.1
Organism
Cucurbita moschata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family LBD
Protein Properties Length: 303aa    MW: 33662.9 Da    PI: 9.3812
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022933273.1genomeNCBIView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26093.23e-2970173199
          DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                     +C++C+vlr++C+++C ++p++     p++q++++ +++k++G++ +++l++a p++ r+++++sl++eA+ r+ +P+yG++g+++++++ql+q 
  XP_022933273.1  70 SCNGCRVLRKGCSESCSIRPCLqwiktPQSQANATFFLAKFYGRAGLVNLINAGPDHLRPAIFKSLLFEACGRIVNPIYGSAGLLWSGSWQLCQD 164
                     6********************************************************************************************** PP

          DUF260  91 kaelallke 99 
                     ++e++l ++
  XP_022933273.1 165 AVEAVLKGA 173
                     **9988766 PP
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    
MEVVKESFPM VSKKPENRRN WKTTIFLENH LRKSLQKQNP PLFLSPSTFL PFYAQILLRY  60
SSIHRAMRIS CNGCRVLRKG CSESCSIRPC LQWIKTPQSQ ANATFFLAKF YGRAGLVNLI  120
NAGPDHLRPA IFKSLLFEAC GRIVNPIYGS AGLLWSGSWQ LCQDAVEAVL KGAPILSVSS  180
ETAVSHMGPP LKGCDIRHVS KQQGAAPDSA LRKIKTRRRF KRSAPNKPMP KEEPVVVNEF  240
VFDDPTRVVS EPRCLKFELD SWVGHKSQEK DCSSSSDEAE CLSVEGSAVG QGGDVELELS  300
LGL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.12e-82LBD family protein