PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022933148.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

AP2

Protein Properties

Length: 628aa MW: 68489.2 Da PI: 6.7785

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022933148.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	44.6	3.7e-14	261	320	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + g ++ ++++lg ++ +++Aa+a++ a++k++g XP_022933148.1 261 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqtRKgRQVYLGGYDKEQKAARAYDLAALKYWG 320 57*****************666664478446******99***********98 PP
2	AP2	46.9	7e-15	363	414	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g XP_022933148.1 363 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 414 57**************988532...5**********************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 628 aa Download sequence
MASINWLGFS LSPQHHQLPH HPSDHPHAVS AAAFTTDQIS ASDVPAVCFD NLPSSYGVYD 60 SQDWNSVKGL GQTQSSDFSG LIDTHHQPKL ENFLGHHSFT DHDHPAAVYT NASANYIFQN 120 CSLELPSEPN GGSGDGGGRP NPSNGNYTSS IGLSMIKTWL RNQPAPPQAV AKSGGDHDGA 180 VAKPNITNPH TLSLSMNTGP PPPPSQSSDS EALPLLVTNG GESSSSDKKQ PKSSATEVDT 240 ENSAIEAVPR KSMDTFGQRT SIYRGVTRHR WTGRYEAHLW DNSCRREGQT RKGRQVYLGG 300 YDKEQKAARA YDLAALKYWG TTTTTNFPIS DYEKELEDMK HMTRQEFVAS LRRKSSGFSR 360 GASIYRGVTR HHQHGRWQAR IGRVAGNKDL YLGTFSTQEE AAEAYDIAAI KFRGLNAVTN 420 FDMTRYDVKA ILESNTLPVG GAAKRLKDID HSNIPLHLQS TEENISSHLS NGIITTGGGG 480 WPTLAFHHHH HPYASHYPYG ALQQRLWCKQ ENDVTAGNFL DSMDQSSGSS SVVYSRDGYG 540 GNFMIPMGAE GGGLGDIGEV NMFGGGCNVD DPFHATRTSN LYDYNNSSHQ LQQPPPELQA 600 SSGNNWLPPA RSVCHGGTPP PFTIWNDT

Sequence ? help Back to Top

Protein Sequence Length: 628 aa Download sequence

MASINWLGFS LSPQHHQLPH HPSDHPHAVS AAAFTTDQIS ASDVPAVCFD NLPSSYGVYD  60
SQDWNSVKGL GQTQSSDFSG LIDTHHQPKL ENFLGHHSFT DHDHPAAVYT NASANYIFQN  120
CSLELPSEPN GGSGDGGGRP NPSNGNYTSS IGLSMIKTWL RNQPAPPQAV AKSGGDHDGA  180
VAKPNITNPH TLSLSMNTGP PPPPSQSSDS EALPLLVTNG GESSSSDKKQ PKSSATEVDT  240
ENSAIEAVPR KSMDTFGQRT SIYRGVTRHR WTGRYEAHLW DNSCRREGQT RKGRQVYLGG  300
YDKEQKAARA YDLAALKYWG TTTTTNFPIS DYEKELEDMK HMTRQEFVAS LRRKSSGFSR  360
GASIYRGVTR HHQHGRWQAR IGRVAGNKDL YLGTFSTQEE AAEAYDIAAI KFRGLNAVTN  420
FDMTRYDVKA ILESNTLPVG GAAKRLKDID HSNIPLHLQS TEENISSHLS NGIITTGGGG  480
WPTLAFHHHH HPYASHYPYG ALQQRLWCKQ ENDVTAGNFL DSMDQSSGSS SVVYSRDGYG  540
GNFMIPMGAE GGGLGDIGEV NMFGGGCNVD DPFHATRTSN LYDYNNSSHQ LQQPPPELQA  600
SSGNNWLPPA RSVCHGGTPP PFTIWNDT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17430.1	1e-127	AP2 family protein