PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022930819.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

C2H2

Protein Properties

Length: 441aa MW: 48300.5 Da PI: 8.9018

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022930819.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.2	6.1e-05	59	79	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C +Cgk F r nL+ H r H XP_022930819.1 59 CDICGKGFQRDQNLQLHRRGH 79 *******************88 PP
2	zf-C2H2	13	0.00032	135	157	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +t+ XP_022930819.1 135 WKCEKCSKKYAVQSDWKAHSKTC 157 58*****************9998 PP
3	zf-C2H2	12.2	0.00056	165	183	5	23
TTTEEESSHHHHHHHHHHT CS zf-C2H2 5 dCgksFsrksnLkrHirtH 23 dCg++Fsr++++++H + XP_022930819.1 165 DCGTPFSRRDSYVTHRAYC 183 8**************8765 PP

Sequence ? help Back to Top
Protein Sequence Length: 441 aa Download sequence
MSEEQTISNA FICSLPTLGS NNNPPVLKKK RNLPGNPDPK AEVVALSPKT LMATNRFLCD 60 ICGKGFQRDQ NLQLHRRGHN LPWKLKQRSN SNKEPRKRVY VCPEKSCVHH HPSRALGDLT 120 GIKKHFCRKH GEKKWKCEKC SKKYAVQSDW KAHSKTCGTK EYKCDCGTPF SRRDSYVTHR 180 AYCMALAEET ARLNAAASTL NTADNSYHFL RPNTNPHQYF PSSTLFRQDH ETSQMFLNNN 240 VNSLTPTIAF PFWMPNSSPQ DNNFHHPLAP PPPPPPPPPP TATTTSCLLS VPSLYSHEEQ 300 ANQAMASSSA AAAAAANMSA TVLLQKAAEM AVTSSTTTDP SSLMASFGLK FSATTDGKAL 360 FSGLYGSINS NSIPSCCSLE NGGDHQDSAA SNLIQMYPAA KRIRHTVSEE SVTGGEGETR 420 DFLGVGIPTI CHHPSAVNGW M

Sequence ? help Back to Top

Protein Sequence Length: 441 aa Download sequence

MSEEQTISNA FICSLPTLGS NNNPPVLKKK RNLPGNPDPK AEVVALSPKT LMATNRFLCD  60
ICGKGFQRDQ NLQLHRRGHN LPWKLKQRSN SNKEPRKRVY VCPEKSCVHH HPSRALGDLT  120
GIKKHFCRKH GEKKWKCEKC SKKYAVQSDW KAHSKTCGTK EYKCDCGTPF SRRDSYVTHR  180
AYCMALAEET ARLNAAASTL NTADNSYHFL RPNTNPHQYF PSSTLFRQDH ETSQMFLNNN  240
VNSLTPTIAF PFWMPNSSPQ DNNFHHPLAP PPPPPPPPPP TATTTSCLLS VPSLYSHEEQ  300
ANQAMASSSA AAAAAANMSA TVLLQKAAEM AVTSSTTTDP SSLMASFGLK FSATTDGKAL  360
FSGLYGSINS NSIPSCCSLE NGGDHQDSAA SNLIQMYPAA KRIRHTVSEE SVTGGEGETR  420
DFLGVGIPTI CHHPSAVNGW M

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44160.1	1e-114	C2H2 family protein