PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_022930596.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
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Family | C3H | ||||||||
Protein Properties | Length: 431aa MW: 46533.7 Da PI: 7.7582 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 26.1 | 1.5e-08 | 106 | 127 | 3 | 25 |
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 ++lC+f+ + G C yGd+C+F H XP_022930596.1 106 EKLCNFWVQ-GKCGYGDKCRFLH 127 579******.************* PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 431 aa Download sequence |
MDVDGGGKRV FQRLGAPSGD GRNQKVCYHW RAGKCNRYPC PFLHRELNAP PHATSNGATN 60 AAPKRGNGFS SDDSSVSVPR RSPNFSGGST WGRVHGGGNR VVKKTEKLCN FWVQGKCGYG 120 DKCRFLHTWS LGESFSHLTQ LDGHQKVVTG IAFPSGSDKL YTGSKDETVR VWDCQSGQCL 180 AVINLCGEVG SMITEGPWVF VGIPNCVKAW NIQTSADLSL SGPVGLVYAL VVGNDLLFAG 240 TQDGSILAWK FNVATNCFEP AASLNGHTLP VVSLVVGANR LYSGSMDHSI KVWSLESLQC 300 LQTLTDHTSV VMSVLCWEQF LLSCSLDKTI KVWAATESGN LEVTYTHTED HGLLTLCGMH 360 DLDGKPILLC SCNDNSVRLY DLPSFSERGK IHSKGEIRSI QAGPGGVFFT GDGTGQVKVW 420 KWSAEHAAAG M |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25440.1 | 0.0 | C3H family protein |