PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022930094.1
Organism
Cucurbita moschata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family C3H
Protein Properties Length: 343aa    MW: 37658.1 Da    PI: 9.2712
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022930094.1genomeNCBIView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH30.65.6e-10193219127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     y+t +Cr +  +G C++G +C+FaHg+
  XP_022930094.1 193 YRTDICRSWEDSGSCRFGHKCQFAHGK 219
                     89***********************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    
MEDRQGKRSS KASTIKGLNA TVRPIKIQMD NHLVIGGTGH YHQETNSKIP TILDRYAEKH  60
DRSTPIVSYF RSRSPVVGKL PSVGDTFSTP VADVINANYR SSIINHFASS TSGSSSFGSR  120
RGGSSLSPLS AIENLETTPV RSPQIYGTPL KVHEEVIVMD EILISSVHGG AKTLKSALES  180
GGGGGSSLSK NQYRTDICRS WEDSGSCRFG HKCQFAHGKE ELRPVHLPLK TKPKFGEPYL  240
THGLKSRNNH SLTGIATTTQ SNSFDTTFKT ELSRRGHSIN SIHNLNTDWS PEDDSIEAIV  300
PETKSTRGDV DQYILEVLYG STTERAKKRL PVFVQLCSSQ QEE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.11e-08C3H family protein