PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_022930093.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
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Family | C3H | ||||||||
Protein Properties | Length: 343aa MW: 37658.1 Da PI: 9.2712 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 30.6 | 5.6e-10 | 193 | 219 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 y+t +Cr + +G C++G +C+FaHg+ XP_022930093.1 193 YRTDICRSWEDSGSCRFGHKCQFAHGK 219 89***********************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 343 aa Download sequence |
MEDRQGKRSS KASTIKGLNA TVRPIKIQMD NHLVIGGTGH YHQETNSKIP TILDRYAEKH 60 DRSTPIVSYF RSRSPVVGKL PSVGDTFSTP VADVINANYR SSIINHFASS TSGSSSFGSR 120 RGGSSLSPLS AIENLETTPV RSPQIYGTPL KVHEEVIVMD EILISSVHGG AKTLKSALES 180 GGGGGSSLSK NQYRTDICRS WEDSGSCRFG HKCQFAHGKE ELRPVHLPLK TKPKFGEPYL 240 THGLKSRNNH SLTGIATTTQ SNSFDTTFKT ELSRRGHSIN SIHNLNTDWS PEDDSIEAIV 300 PETKSTRGDV DQYILEVLYG STTERAKKRL PVFVQLCSSQ QEE |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66810.1 | 1e-08 | C3H family protein |