PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022929711.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

LBD

Protein Properties

Length: 218aa MW: 24394.5 Da PI: 8.4891

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022929711.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	146.7	6.6e-46	9	108	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrrkC+++Cv+apyfp +qp+kfanvhk+FGasnv+kll++l++++reda++sl+yeA++r+rdPvyG+vgvi+ lq+ql++l+ +l XP_022929711.1 9 PCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELHPHQREDAVNSLAYEADMRLRDPVYGCVGVISLLQHQLCKLQMDLT 103 7*********************************************************************************************9 PP DUF260 96 llkee 100 ++k+e XP_022929711.1 104 SAKSE 108 99887 PP

Sequence ? help Back to Top
Protein Sequence Length: 218 aa Download sequence
MASTSSNSPC AACKFLRRKC QPECVFAPYF PPDQPQKFAN VHKVFGASNV TKLLNELHPH 60 QREDAVNSLA YEADMRLRDP VYGCVGVISL LQHQLCKLQM DLTSAKSELS KYKTLGIGNP 120 AALISSPSPL TAQRNHQPTF NFGRDQPHSL CYDQFFPRDQ QQQQQQQQQQ MMLRRSFDGG 180 TNYDGLLAVN VTVGNLTHPF QQSRAAAGDD RRGTLDHS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G65620.3	3e-78	LBD family protein