PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022929291.1
Organism
Cucurbita moschata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family GRAS
Protein Properties Length: 546aa    MW: 60564.3 Da    PI: 6.272
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022929291.1genomeNCBIView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS294.72.4e-901845453374
            GRAS   3 elLlecAeavssgdlelaqalLarlsel..aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     e L+++A++++s+d++la+ +L+rl+++  ++++++p++R+a++f+eAL++ l+      ++  + s++s+ + +++++a+k+fs +sPi+ fsh
  XP_022929291.1 184 EDLVDAADCFDSNDFHLAHVILERLNHRlqSASSAKPLHRAAFFFKEALQSLLSA-----AANRHNSSSSWPDIVHTIKAHKAFSAISPIPLFSH 273
                     689************************98677777*******************9.....44445666667789********************* PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpeg....ppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrl 186
                     +t+Nq +lea++ ++ +HiiDfdi+ G+Q+++++++La+++e+    pp +RiT+v+ +e   + e + t+e+L +fA+ l+++f+++++  +++
  XP_022929291.1 274 FTTNQILLEALNASSFIHIIDFDIGFGGQYASFMKELADKAESrnvvPPVIRITAVVFEE--FAVESRLTRENLCQFAQDLKLRFHIDLVPLQTF 366
                     **************************************888544555***********65..8899999********************9999** PP

            GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adhnsesFlerflealeyysalfdsleaklpres 279
                     ++l++++ ++ +gE++a+ l   ++r l +s  ++s    +L  v+ +sP vvv+v+ e  +d +++sF + +l++le+y+++++sl+a  +++ 
  XP_022929291.1 367 KTLSFKSVKFMEGEKVAILLTPTIFRRLGSSNGIAS----FLADVRLVSPCVVVFVDFEgwSDSGKASFKRNLLDSLEFYAMMLESLDAA-GADG 456
                     ****************************88777777....*******************777889**********************998.7899 PP

            GRAS 280 eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     e+ + +E ++l+++i  +v  +g+        +  Wre ++++G++pv+ls++a  qa++ll kv+++g++v +++++lvl+W++rpLv++SaWr
  XP_022929291.1 457 EWVRQIETFVLRPKILAAVEGAGRI------AVPPWREVFHSVGMRPVALSQFADFQAECLLGKVQVRGFQVGKRHAELVLCWHERPLVATSAWR 545
                     *****************99988887......799************************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 546 aa     Download sequence    
MRVPVSNHHS SKPSSAPAPN PKLDSSPSPT AFRPPTTTAT AATPGYEPTS VLDLRRSPSP  60
VAPDNPLSSA DDRHNNSHPL DWDERTLQNL DWESIMGDLG VNDDSNSALK NTTAATTTTT  120
DDNTHDHVPQ FSEFLHSQPF DQTAHLLPSD FFLTEPYSNH SAAMLHHTFD FAPNSNDPSL  180
HFLEDLVDAA DCFDSNDFHL AHVILERLNH RLQSASSAKP LHRAAFFFKE ALQSLLSAAA  240
NRHNSSSSWP DIVHTIKAHK AFSAISPIPL FSHFTTNQIL LEALNASSFI HIIDFDIGFG  300
GQYASFMKEL ADKAESRNVV PPVIRITAVV FEEFAVESRL TRENLCQFAQ DLKLRFHIDL  360
VPLQTFKTLS FKSVKFMEGE KVAILLTPTI FRRLGSSNGI ASFLADVRLV SPCVVVFVDF  420
EGWSDSGKAS FKRNLLDSLE FYAMMLESLD AAGADGEWVR QIETFVLRPK ILAAVEGAGR  480
IAVPPWREVF HSVGMRPVAL SQFADFQAEC LLGKVQVRGF QVGKRHAELV LCWHERPLVA  540
TSAWRC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.11e-127GRAS family protein