PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_022928896.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
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Family | ARF | ||||||||
Protein Properties | Length: 695aa MW: 77187.4 Da PI: 6.4728 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 77.3 | 1.6e-24 | 129 | 230 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+kvlt sd++++g +++ +k+a+e+ + + +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD++vF + + XP_022928896.1 129 FCKVLTASDTSTHGGFSVLRKHATEClppldmtQ--ATPTQDLVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLSAGDSFVFL--RGD 219 99****************************9543..445568************************************************..348 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 ++el+v+v+r+ XP_022928896.1 220 NGELHVGVRRR 230 9999*****97 PP | |||||||
2 | Auxin_resp | 99.8 | 3.8e-33 | 255 | 333 | 1 | 82 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 a+ha++t++ F v+Y+Pr+ +F+++++k+++a+++k+svGmRf m+fe+eds+err+sGt++g +d++p +WpnS WrsL XP_022928896.1 255 ASHAVTTQTRFVVYYKPRT--CQFIISLNKYLEAVNNKFSVGMRFNMSFEGEDSPERRFSGTIIGATDISP-HWPNSSWRSL 333 689***************6..89**********************************************99.*********9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 695 aa Download sequence |
MACNGGDSYT QSCVSTQGSG RNDLYTELWR ACAGPLVDVP RVDERVFYFP QGHMEQLEAS 60 TNLELNKRIP LCNLSSKILC RVIHIELLAD HESDEVYAQI TLMPESNQNE PNSLDPCPPE 120 PARPVVHSFC KVLTASDTST HGGFSVLRKH ATECLPPLDM TQATPTQDLV AKDLHGYEWR 180 FKHIFRGQPR RHLLTTGWST FVTSKRLSAG DSFVFLRGDN GELHVGVRRR ARQQSSMPSS 240 VISSQSMHLG VLATASHAVT TQTRFVVYYK PRTCQFIISL NKYLEAVNNK FSVGMRFNMS 300 FEGEDSPERR FSGTIIGATD ISPHWPNSSW RSLRVQWDEQ TSILRPDRVS PWDIEPLTSS 360 AVTGLSQPIS KNKRPRQSTP AHDGADLPKP ALWDSGLAES HDGKQSSNAA ESRKGENNEL 420 CHHRETDAIS NRTCVSRTQA DGTWLSSIQS NSHKHPVNDM AQDYKTVPGC GWSFLSGPST 480 SHLVKLSDEQ ILDSTENGRK GETVASCRLF GIDLNHLAKL PTEKASYQPS SVSSDTDGRS 540 STLSVAQSDP KSDNLEVSVE RKSEPLQASL KETQSNQSSS ANTRSRTKVH MHGMAVGRAV 600 DLAILEGYDQ LIDELEKMFD VRGQLCARDK WEIVYTDDEG DMMLVGDDPW EEFCNMVRRI 660 FICSREQVKK MSSGSKQLTS IEVEGAAIIP DSPAV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G23980.2 | 0.0 | ARF family protein |