PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022928566.1
Organism
Cucurbita moschata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family GRAS
Protein Properties Length: 471aa    MW: 52950.7 Da    PI: 6.3271
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022928566.1genomeNCBIView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS460.69.1e-141464681374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l++lLl+cA++v+ g+l +a+ +L ++s+las dgd+mqR+aayf+eALa+r+++++++lyka+++++ +   +see+ + klf+ev+P+lk++ 
  XP_022928566.1  46 LIHLLLTCANHVAVGSLDNANLALDQISHLASADGDTMQRIAAYFAEALANRILKTWPGLYKAFNSTKIP--VVSEEILVKKLFFEVFPFLKVAI 138
                     689*************************************************************999998..69********************* PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190
                     +++NqaI+ea+ege+++HiiD+d+++ +QW+aLlq L+ Rpegpp+lRiTgv++    +k+ l +++++L++ Ae++++pf+f+  v+ rledl+
  XP_022928566.1 139 VLTNQAIVEAMEGEKMIHIIDLDANETAQWLALLQVLSVRPEGPPHLRITGVHQ----QKQVLDRMARQLTEEAEKFDIPFRFDS-VVCRLEDLD 228
                     ******************************************************....9**************************.6899***** PP

            GRAS 191 leeLrvkpgEalaVnlvlqlhrll........................................................desvsleserdevLk 229
                     +e+Lrvk+gEala+++vlqlh+ll                                                        + s++   ++d++L+
  XP_022928566.1 229 MEKLRVKTGEALAISSVLQLHTLLaadnevlqkssplagksangvhysryqhpnqtnlsellekdsvngcspspdsvsssALSQANVTKIDSFLN 323
                     ****************************************************************************996633333333799**** PP

            GRAS 230 lvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGF 324
                      ++sl Pkv+vv+eq+++hn+++++er leal++y+a+fd+le++++r+s er k+E++l+g+ei+n++aceg er+erhe+ ekW++r++ aGF
  XP_022928566.1 324 GLWSLTPKVMVVTEQDSNHNGATLMERSLEALHTYAAIFDCLESNMSRTSLERLKLEKMLFGEEIKNIIACEGGERKERHEKREKWSQRFDLAGF 418
                     *********************************************************************************************** PP

            GRAS 325 kpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     + vpls++ + qa++ll+ ++ dgyr++ee+g+++++W+dr+L+svSaWr
  XP_022928566.1 419 RHVPLSYYGMLQARSLLQGYGCDGYRLKEENGCVMICWQDRSLFSVSAWR 468
                     *************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    
MFQDEGTSSI TSSPLQFFTM MSLSPKLGSP YPWLRELKSE ERGLYLIHLL LTCANHVAVG  60
SLDNANLALD QISHLASADG DTMQRIAAYF AEALANRILK TWPGLYKAFN STKIPVVSEE  120
ILVKKLFFEV FPFLKVAIVL TNQAIVEAME GEKMIHIIDL DANETAQWLA LLQVLSVRPE  180
GPPHLRITGV HQQKQVLDRM ARQLTEEAEK FDIPFRFDSV VCRLEDLDME KLRVKTGEAL  240
AISSVLQLHT LLAADNEVLQ KSSPLAGKSA NGVHYSRYQH PNQTNLSELL EKDSVNGCSP  300
SPDSVSSSAL SQANVTKIDS FLNGLWSLTP KVMVVTEQDS NHNGATLMER SLEALHTYAA  360
IFDCLESNMS RTSLERLKLE KMLFGEEIKN IIACEGGERK ERHEKREKWS QRFDLAGFRH  420
VPLSYYGMLQ ARSLLQGYGC DGYRLKEENG CVMICWQDRS LFSVSAWRCC K
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0GRAS family protein