PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022928544.1
Organism
Cucurbita moschata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family LBD
Protein Properties Length: 189aa    MW: 21079.7 Da    PI: 8.7068
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022928544.1genomeNCBIView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260142.31.5e-44281271100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +CaaCk+lrrkC ++Cv+apyfp+e+p+kfanvhk+FGasnv+kll+++++++reda++sl+yeAear++dPvyG+vg i+ lq+q+ +l+ el+
  XP_022928544.1  28 PCAACKFLRRKCLPNCVFAPYFPSEEPQKFANVHKIFGASNVSKLLNEVQPHQREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQRELD 122
                     7*********************************************************************************************9 PP

          DUF260  96 llkee 100
                     +++++
  XP_022928544.1 123 ATNAN 127
                     98765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    
MLKQQLKQRK EMEKNYGKMS SSTYSNSPCA ACKFLRRKCL PNCVFAPYFP SEEPQKFANV  60
HKIFGASNVS KLLNEVQPHQ REDAVNSLAY EAEARMKDPV YGCVGAISIL QRQVIKLQRE  120
LDATNANLIR YACSELPAPS SSSSSQYARR SSSTSHIGSS STSSYGHYYS GLYFCGPCGD  180
DHDKGEEHK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27650.19e-68LBD family protein