PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022928509.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

SBP

Protein Properties

Length: 346aa MW: 38815.9 Da PI: 6.6939

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022928509.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	131.4	3.1e-41	65	142	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +C v+gC++dls++keyhrrh+vC+ hsk+pvv+v+g+e+rfCqqCsrfh+l efDe krsCr+rL++hn+rrrk+q+ XP_022928509.1 65 TCLVDGCDSDLSNCKEYHRRHRVCDLHSKTPVVMVRGEEKRFCQQCSRFHSLGEFDEVKRSCRKRLDGHNRRRRKPQP 142 5**************************************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence
MDWGWRKFSG ERVTFQENKQ NPTSFSDSIG SNNEEQILKG SSQESSTSHG SSKRTRLLHA 60 SQNQTCLVDG CDSDLSNCKE YHRRHRVCDL HSKTPVVMVR GEEKRFCQQC SRFHSLGEFD 120 EVKRSCRKRL DGHNRRRRKP QPESLFISSR DFLSNCKGPI VLQFSDQQVH VPDELGRSLW 180 PTRTEENSSL IPSNSSGFFS FGGGDNKQLP FLQPKNGSKQ GKHMVSSQFC FNQQLPDAIS 240 QVSEGDSQKT VPPNNSPEDS GCALYLLSSH PVQALPEAGL SSLVQSHLSL PVQTQEETEL 300 NFSSLSDFSE SFGSKDKAVS KTNVHHSELG LEMEEESNGL FPISWE

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence

MDWGWRKFSG ERVTFQENKQ NPTSFSDSIG SNNEEQILKG SSQESSTSHG SSKRTRLLHA  60
SQNQTCLVDG CDSDLSNCKE YHRRHRVCDL HSKTPVVMVR GEEKRFCQQC SRFHSLGEFD  120
EVKRSCRKRL DGHNRRRRKP QPESLFISSR DFLSNCKGPI VLQFSDQQVH VPDELGRSLW  180
PTRTEENSSL IPSNSSGFFS FGGGDNKQLP FLQPKNGSKQ GKHMVSSQFC FNQQLPDAIS  240
QVSEGDSQKT VPPNNSPEDS GCALYLLSSH PVQALPEAGL SSLVQSHLSL PVQTQEETEL  300
NFSSLSDFSE SFGSKDKAVS KTNVHHSELG LEMEEESNGL FPISWE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	123	140	KRSCRKRLDGHNRRRRKP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50670.1	1e-45	SBP family protein