PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022927856.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

NF-YC

Protein Properties

Length: 269aa MW: 30230.9 Da PI: 6.3037

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022927856.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	178.4	6.8e-56	81	185	1	102
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdfl 92 ql++fw++q ie++tdfknh+lPlarikki+kadedv+misaeaPv+++kace+fileltlrsw+h+eenkrrtl+k+diaaa++rtd+fdfl XP_022927856.1 81 QLQVFWANQmqeIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFL 175 89****988889***************************************************************************** PP NF-YC 93 vdivprdelk 102 vdi+prdelk XP_022927856.1 176 VDIIPRDELK 185 *****975 PP

Sequence ? help Back to Top
Protein Sequence Length: 269 aa Download sequence
MDQSERSQHQ QQSQQAAGGV GAGQLPYSNP YQTAPMGASG TPAITIPPTQ QPSSFSNSPH 60 QLAFQQAQHF HQQQQQQQQQ QLQVFWANQM QEIEQTTDFK NHSLPLARIK KIMKADEDVR 120 MISAEAPVIF AKACEMFILE LTLRSWIHTE ENKRRTLQKN DIAAAISRTD VFDFLVDIIP 180 RDELKEEGLG ITKASIPVVG SPADLPYYYV PSQHPVSATG MIMGKQLDQA NMYGATAQQP 240 RPPIPFMPWP HTQAQQQQQQ QQTQQQSDA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	154	160	RRTLQKN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G56170.1	3e-81	NF-YC family protein