PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022926473.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

C3H

Protein Properties

Length: 745aa MW: 82233.6 Da PI: 7.0619

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022926473.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.1	2.7e-07	223	243	4	25
---SGGGGTS--TTTTT-SS-S CS zf-CCCH 4 elCrffartGtCkyGdrCkFaH 25 ++C+f+a+ G+C G++C+F H XP_022926473.1 223 AICDFYAK-GWCIKGSSCSFLH 243 68****.*********** PP

Sequence ? help Back to Top
Protein Sequence Length: 745 aa Download sequence
MRGIFIELES RGHAQVPRKN VYLVDVCNDM DAKRHDKHLR SDTITTTGNS EVKKLSSVGE 60 TESNGNIEFA RLSGEPLTKL VEQSHGECTK VESRKCPKDK ETEDQELTVG DKDVEALRNN 120 LPKDSGGSIY NSKVPLCNRG IINAKVSNGL SVTVEDSDIG LENHLVGGNN GSTNPEREST 180 QTDMQLENGK NQMASRSAAS KKRTRKLSPG ADVNIEQKRP AAAICDFYAK GWCIKGSSCS 240 FLHIKDNAHA SDQHSEEHAG AVYLKKQVQP NQGLQYSADA SKSPVFHHPP NSSLLKDSSL 300 SLKFGISSER TLSRDFTESK GWDVLHEKNK FLLHQREDSL LREHPDCQKL PSTGFDVSFP 360 LNREGSTARN DQPPEFGPSS GGFAKLSVME EPANVACPRL LNDYHSPVLR SSLNSNTTLT 420 KGGILSSRFT TSNDSFPFTP SSSASFFGAQ KMSIIDGEHR VSMPASSFMR SSPFSPSESD 480 NSLINASMNS SDYKTKYSCD DWEPSEPFRP SFFIPSINTA SQYDPFLDSI ELPRKVGGCH 540 NPWSSKPEFN DDTSSLSSHN KAEDKNEKAG HVQGTDSLML EAEIQGSSGI DGCNGSRTRE 600 DDQIGLIREK NVPKKMKTDT DGEIKLSNIA LHEKESEAES DRQLGDMDGK HLIDGNVHKE 660 SKATRHFRSA LIELVKAILR PKWREGHLKK DVHNTVVKKT LDKVLGTLQP FQVPTTVESV 720 KQYLSSSRPK IEKLVEGYVS KYGKS

Sequence ? help Back to Top

Protein Sequence Length: 745 aa Download sequence

MRGIFIELES RGHAQVPRKN VYLVDVCNDM DAKRHDKHLR SDTITTTGNS EVKKLSSVGE  60
TESNGNIEFA RLSGEPLTKL VEQSHGECTK VESRKCPKDK ETEDQELTVG DKDVEALRNN  120
LPKDSGGSIY NSKVPLCNRG IINAKVSNGL SVTVEDSDIG LENHLVGGNN GSTNPEREST  180
QTDMQLENGK NQMASRSAAS KKRTRKLSPG ADVNIEQKRP AAAICDFYAK GWCIKGSSCS  240
FLHIKDNAHA SDQHSEEHAG AVYLKKQVQP NQGLQYSADA SKSPVFHHPP NSSLLKDSSL  300
SLKFGISSER TLSRDFTESK GWDVLHEKNK FLLHQREDSL LREHPDCQKL PSTGFDVSFP  360
LNREGSTARN DQPPEFGPSS GGFAKLSVME EPANVACPRL LNDYHSPVLR SSLNSNTTLT  420
KGGILSSRFT TSNDSFPFTP SSSASFFGAQ KMSIIDGEHR VSMPASSFMR SSPFSPSESD  480
NSLINASMNS SDYKTKYSCD DWEPSEPFRP SFFIPSINTA SQYDPFLDSI ELPRKVGGCH  540
NPWSSKPEFN DDTSSLSSHN KAEDKNEKAG HVQGTDSLML EAEIQGSSGI DGCNGSRTRE  600
DDQIGLIREK NVPKKMKTDT DGEIKLSNIA LHEKESEAES DRQLGDMDGK HLIDGNVHKE  660
SKATRHFRSA LIELVKAILR PKWREGHLKK DVHNTVVKKT LDKVLGTLQP FQVPTTVESV  720
KQYLSSSRPK IEKLVEGYVS KYGKS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	5e-32	C3H family protein