PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022926472.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family C3H
Protein Properties Length: 746aa    MW: 82304.6 Da    PI: 7.0619
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022926472.1genomeNCBIView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.12.7e-07223243425
                     ---SGGGGTS--TTTTT-SS-S CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaH 25 
                     ++C+f+a+ G+C  G++C+F H
  XP_022926472.1 223 AICDFYAK-GWCIKGSSCSFLH 243
                     68******.************* PP

Sequence ? help Back to Top
Protein Sequence    Length: 746 aa     Download sequence    
MRGIFIELES RGHAQVPRKN VYLVDVCNDM DAKRHDKHLR SDTITTTGNS EVKKLSSVGE  60
TESNGNIEFA RLSGEPLTKL VEQSHGECTK VESRKCPKDK ETEDQELTVG DKDVEALRNN  120
LPKDSGGSIY NSKVPLCNRG IINAKVSNGL SVTVEDSDIG LENHLVGGNN GSTNPEREST  180
QTDMQLENGK NQMASRSAAS KKRTRKLSPG ADVNIEQKRP AAAICDFYAK GWCIKGSSCS  240
FLHIKDNAHA SDQHSEEHAG AVYLKKQVQP NQAGLQYSAD ASKSPVFHHP PNSSLLKDSS  300
LSLKFGISSE RTLSRDFTES KGWDVLHEKN KFLLHQREDS LLREHPDCQK LPSTGFDVSF  360
PLNREGSTAR NDQPPEFGPS SGGFAKLSVM EEPANVACPR LLNDYHSPVL RSSLNSNTTL  420
TKGGILSSRF TTSNDSFPFT PSSSASFFGA QKMSIIDGEH RVSMPASSFM RSSPFSPSES  480
DNSLINASMN SSDYKTKYSC DDWEPSEPFR PSFFIPSINT ASQYDPFLDS IELPRKVGGC  540
HNPWSSKPEF NDDTSSLSSH NKAEDKNEKA GHVQGTDSLM LEAEIQGSSG IDGCNGSRTR  600
EDDQIGLIRE KNVPKKMKTD TDGEIKLSNI ALHEKESEAE SDRQLGDMDG KHLIDGNVHK  660
ESKATRHFRS ALIELVKAIL RPKWREGHLK KDVHNTVVKK TLDKVLGTLQ PFQVPTTVES  720
VKQYLSSSRP KIEKLVEGYV SKYGKS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.15e-32C3H family protein