PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_022926046.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
|
||||||||
Family | ARF | ||||||||
Protein Properties | Length: 634aa MW: 69696.8 Da PI: 6.5039 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 75.4 | 6.3e-24 | 120 | 221 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f k+lt+sd+++ g +++p+ +ae++ ++ + t+ +d +g++W++++iyr++++r++lt+GW++Fv+ ++L +gD++vF + + XP_022926046.1 120 FAKTLTQSDANNGGGFSVPRYCAETIfppldysADPPVQ--TILAKDVHGETWKFRHIYRGTPRRHLLTTGWSSFVNHKKLVAGDSIVFL--RAE 210 89****************************996555555..89***********************************************..448 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 ++ l+v+++r+ XP_022926046.1 211 NGDLCVGIRRA 221 8999****997 PP | |||||||
2 | Auxin_resp | 111.3 | 9.7e-37 | 264 | 346 | 1 | 82 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsL 82 aa+ a+++++Fe+v++Prast+eF+vk++ v++al+++++ GmRfkmafetedss++++ +Gtv +v+ +dp+rWp+S+Wr+L XP_022926046.1 264 AATLAANGQPFEIVFYPRASTPEFCVKAALVKAALQIRWCSGMRFKMAFETEDSSRISWfMGTVNSVQVADPLRWPESPWRLL 346 68899****************************************************************************98 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 634 aa Download sequence |
MITFMDSKEK SKEMDKCLDP QLWHACAGGM VQMPPVNARV FYFPQGHAEH ACASPVDFRT 60 CPRLPSYTLC RVSAIKFLAD PDTDEVFAKL RLIPINGSEL DFDDGIGRLT GSVQDKPTSF 120 AKTLTQSDAN NGGGFSVPRY CAETIFPPLD YSADPPVQTI LAKDVHGETW KFRHIYRGTP 180 RRHLLTTGWS SFVNHKKLVA GDSIVFLRAE NGDLCVGIRR AKRGAGDGPD LSCGWNGAVP 240 YGAFSANESL MGKGKVKAES VIEAATLAAN GQPFEIVFYP RASTPEFCVK AALVKAALQI 300 RWCSGMRFKM AFETEDSSRI SWFMGTVNSV QVADPLRWPE SPWRLLLVTW DEPDLLQNVK 360 RVSPWLVESV SNMSPIHIAP FSSPRKKLRH PQHPDFPLDN QPPMPLFSSY LHGSGSPFGC 420 PPDNNSAGMQ GARHAHFGLS LSDFHLSKLH SGLFPIGYRS PDPAAESATL SCNAMTEKPS 480 MSENVSCLLT MAHSTQASKK CDGMKTPQLI LFGRPILTEL HMSQTYSGDT VSSVGTGNSS 540 PDGNGDRTEK RADGSGSSLH QQRPLEGSSC ENFQCYKDDR QEVEPNVDPG HCKVFMESED 600 VGRTLDLSSL GSYEELYTQL GNMFEIDNSE TLHL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G30080.1 | 0.0 | ARF family protein |