PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022925884.1
Organism
Cucurbita moschata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family ARF
Protein Properties Length: 892aa    MW: 98993.5 Da    PI: 6.5846
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022925884.1genomeNCBIView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3764.2e-24127228199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   +++
  XP_022925884.1 127 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIARDLHENEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVIFI--WNE 217
                     99*****************************8544444..48************************************************..889 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     + +l+++++r+
  XP_022925884.1 218 KNQLLLGIRRA 228
                     9999****997 PP
2Auxin_resp118.26.5e-39253336183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaa+t+s F+++YnPra++seF+++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdld++rWpnS+Wrs+k
  XP_022925884.1 253 AAHAAATNSRFTIFYNPRACPSEFIIPLAKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDSTRWPNSHWRSVK 336
                     79*********************************9789******************************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 892 aa     Download sequence    
MRLSSAGFSP QPPEGERRVL NSELWHACAG PLVSLPAVGS RVVYFPQGHS EQVAISTNRE  60
VDAHIPSYPS LPPQLICQLH NVTMHADVET DEVYAQMTLQ PLSAQEQKEP CLPAELGAPS  120
KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFSQ QPPAQELIAR DLHENEWKFR  180
HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VIFIWNEKNQ LLLGIRRANR PQTVMPSSVL  240
SSDSMHLGLL AAAAHAAATN SRFTIFYNPR ACPSEFIIPL AKYVKAVYHT RVSVGMRFRM  300
LFETEESSVR RYMGTITGIS DLDSTRWPNS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT  360
TFPLYPSPFS LRLKRPWPTG FPSFHGLKED DLGLNSQLMW LRGDGLDRGI QAMNFPGIGV  420
APWMQPRLDA SMVGMQPEIY QAMAAAALQE MRTVDPAKVQ AASLLQFQQT QTLPNRPTTF  480
MPPQILQQPQ PTFIQGDDNQ RLSHSQAQTL PTVLQQEIKH QTFNNQQQQQ QQQVFDHQQI  540
PSTITTMSQF SSASQSQAQS LQTTPPLCRQ QSFSDSNPNH VTSPIISPLH SLLGSFPQDE  600
SSQLLNLPRT NPMVHSSTWP SKRAAVDPLL SSVNSQFVLP QGENMGTTQT NISQNAISLP  660
PFPGRECSLD QGNTDPQSNL LFGVNIESSS LLMQSGMPNL RGICSDSDST AIPFSSNYVN  720
TAASNFSANP TGTPSNCIED SGFLQSPENT GQVNPSTRTF VKVYKSGSLG RSLDISKFSS  780
YHQLRSELAH MFGLEGELED PVRSGWQLVF VDRENDVLLL GDDPWPEFVN SVWCIKILSP  840
QEVQEMGKQG LELLKSVPIQ RLSNGSCDNY ANRQESSRNL STGITSVGSL EY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37020.20.0ARF family protein