PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022925609.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

C2H2

Protein Properties

Length: 386aa MW: 41861.8 Da PI: 9.1081

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022925609.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.6	1e-05	66	88	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_022925609.1 66 FVCEICNKGFQRDQNLQLHRRGH 88 89*******************88 PP
2	zf-C2H2	16.6	2.2e-05	144	166	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+Lk H++t+ XP_022925609.1 144 WKCEKCSKKYAVHSDLKAHLKTC 166 58*******************98 PP
3	zf-C2H2	11.7	0.00079	174	192	5	23
TTTEEESSHHHHHHHHHHT CS zf-C2H2 5 dCgksFsrksnLkrHirtH 23 dCg++Fsr++++ +H + XP_022925609.1 174 DCGTVFSRRDSFITHRAYC 192 8**************8765 PP

Sequence ? help Back to Top
Protein Sequence Length: 386 aa Download sequence
MSKPSGCSDD GGSLSLENQL THGSSQPHQQ PQLSVPKKKR NLPGTPDPDA EVVALSPGTL 60 MATNRFVCEI CNKGFQRDQN LQLHRRGHNL PWKLKQRTSG SDTRRRRVYV CPETSCVHHN 120 PARALGDLTG IKKHFSRKHG EKNWKCEKCS KKYAVHSDLK AHLKTCGSKE YKCDCGTVFS 180 RRDSFITHRA YCDALTEESN KLAGRGATMA ASPPITLPHH DLMPIPPKPF NLSAGSMFSS 240 SISNDHHFPS SSSAALMSAT ALLQKAAQMG AAVSSPIIQQ KNGFVTTMAP SSFGGMLPTT 300 CLQKCPQENI GGGVDMEMID DILMLNGMFD KSIGEGARKT MTLDLLGAEG GKGRKFQAEE 360 SVGFGGVMEN VGYFCHQGAM GKQGHM

Sequence ? help Back to Top

Protein Sequence Length: 386 aa Download sequence

MSKPSGCSDD GGSLSLENQL THGSSQPHQQ PQLSVPKKKR NLPGTPDPDA EVVALSPGTL  60
MATNRFVCEI CNKGFQRDQN LQLHRRGHNL PWKLKQRTSG SDTRRRRVYV CPETSCVHHN  120
PARALGDLTG IKKHFSRKHG EKNWKCEKCS KKYAVHSDLK AHLKTCGSKE YKCDCGTVFS  180
RRDSFITHRA YCDALTEESN KLAGRGATMA ASPPITLPHH DLMPIPPKPF NLSAGSMFSS  240
SISNDHHFPS SSSAALMSAT ALLQKAAQMG AAVSSPIIQQ KNGFVTTMAP SSFGGMLPTT  300
CLQKCPQENI GGGVDMEMID DILMLNGMFD KSIGEGARKT MTLDLLGAEG GKGRKFQAEE  360
SVGFGGVMEN VGYFCHQGAM GKQGHM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03840.1	1e-101	C2H2 family protein