PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022925600.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

C2H2

Protein Properties

Length: 388aa MW: 42077.9 Da PI: 8.9851

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022925600.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.6	1e-05	68	90	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_022925600.1 68 FVCEICNKGFQRDQNLQLHRRGH 90 89*******************88 PP
2	zf-C2H2	16.6	2.2e-05	146	168	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+Lk H++t+ XP_022925600.1 146 WKCEKCSKKYAVHSDLKAHLKTC 168 58*******************98 PP
3	zf-C2H2	11.7	0.00079	176	194	5	23
TTTEEESSHHHHHHHHHHT CS zf-C2H2 5 dCgksFsrksnLkrHirtH 23 dCg++Fsr++++ +H + XP_022925600.1 176 DCGTVFSRRDSFITHRAYC 194 8**************8765 PP

Sequence ? help Back to Top
Protein Sequence Length: 388 aa Download sequence
MSKPSGCSDD GGSLSLENQL THGSSQPHQQ PQLSVPKKKR NLPGTPDTDP DAEVVALSPG 60 TLMATNRFVC EICNKGFQRD QNLQLHRRGH NLPWKLKQRT SGSDTRRRRV YVCPETSCVH 120 HNPARALGDL TGIKKHFSRK HGEKNWKCEK CSKKYAVHSD LKAHLKTCGS KEYKCDCGTV 180 FSRRDSFITH RAYCDALTEE SNKLAGRGAT MAASPPITLP HHDLMPIPPK PFNLSAGSMF 240 SSSISNDHHF PSSSSAALMS ATALLQKAAQ MGAAVSSPII QQKNGFVTTM APSSFGGMLP 300 TTCLQKCPQE NIGGGVDMEM IDDILMLNGM FDKSIGEGAR KTMTLDLLGA EGGKGRKFQA 360 EESVGFGGVM ENVGYFCHQG AMGKQGHM

Sequence ? help Back to Top

Protein Sequence Length: 388 aa Download sequence

MSKPSGCSDD GGSLSLENQL THGSSQPHQQ PQLSVPKKKR NLPGTPDTDP DAEVVALSPG  60
TLMATNRFVC EICNKGFQRD QNLQLHRRGH NLPWKLKQRT SGSDTRRRRV YVCPETSCVH  120
HNPARALGDL TGIKKHFSRK HGEKNWKCEK CSKKYAVHSD LKAHLKTCGS KEYKCDCGTV  180
FSRRDSFITH RAYCDALTEE SNKLAGRGAT MAASPPITLP HHDLMPIPPK PFNLSAGSMF  240
SSSISNDHHF PSSSSAALMS ATALLQKAAQ MGAAVSSPII QQKNGFVTTM APSSFGGMLP  300
TTCLQKCPQE NIGGGVDMEM IDDILMLNGM FDKSIGEGAR KTMTLDLLGA EGGKGRKFQA  360
EESVGFGGVM ENVGYFCHQG AMGKQGHM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03840.1	1e-99	C2H2 family protein