PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022924959.1
Organism
Cucurbita moschata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family GRAS
Protein Properties Length: 847aa    MW: 91829.3 Da    PI: 6.4837
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022924959.1genomeNCBIView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS421.19.2e-1294738322374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                      +lLl+cAeavs+++le+a+++L ++sel++p g++ qR+aayf eA++arl++s+ ++y+alpp+  ++++s++ ++a+++f+ +sP++kfsh+
  XP_022924959.1 473 LTLLLQCAEAVSADNLEEANKMLLEISELSTPFGTSAQRVAAYFSEAMSARLVSSCLGIYAALPPTLLPHTHSQKIASAFQVFNGISPFVKFSHF 567
                     579******************************************************************************************** PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlel 191
                     taNqaI ea+e+eervHiiD+di+qGlQWp L++ LasRp+gpp +R+Tg+g     s+e le+tg+rL++fAe+lg+pf+f + va+++ +l+l
  XP_022924959.1 568 TANQAIQEAFEREERVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGT----SQEVLEATGKRLTEFAEKLGLPFDFFP-VADKIGNLDL 657
                     *****************************************************....9**************************.7********* PP

            GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvE 286
                     e+L+v+++Ea+aV+++   h+l++ ++s ++    +L+l+++l Pkvv+vveq+++h ++sFl rf+ea++yysalfdsl +++++eseer+ vE
  XP_022924959.1 658 ERLNVSQREAVAVHWMQ--HSLYEVTGSDSN----TLWLLQRLAPKVVTVVEQDLSH-TGSFLGRFVEAIHYYSALFDSLGVSYGEESEERHLVE 745
                     ****************9..999988888888....**********************.889********************************** PP

            GRAS 287 rellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     + ll+rei+nv+a  g +r  + + +++Wre+l+++GFk ++l  +aa+qa lll +++sdgy++ e++g+l lgWkd  L+++SaW+
  XP_022924959.1 746 QLLLSREIRNVLAVGGPSRSGEVK-FQNWREKLQQSGFKGISLAGNAATQATLLLGMFPSDGYTLVEDNGTLKLGWKDLCLLTASAWK 832
                     ******************888776.**************************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 847 aa     Download sequence    
MATYALLGDS AVRINGGFDD GSLTSNSTNS NGSEELNQQI VQVPVQVSQP PPRLPPGKMV  60
RKRIASEIEI EELDGGGGGT AAVHPRFCRR SLASDRPFAG GENKTNENVD NYCSSSNPSH  120
GANHSTVHNL TALTSVVVAG SNLSNPPSGS DATASSTTSN VSSLIDSTLP VLRPQPHHRH  180
LQNPAVCGFS GLPLFPPESN HHHHHNKLNT RNNPFPIPNP CQVVLHNPPT STTTSIIAAA  240
STPMDDSSAT AWIDGIIKDL IHSSTAVSIP QLIQNVRDII YPCNPNLANL LEFRLRTLTE  300
PNVPNFAAED QRVRKSPLPS PAPVGGLGLQ QRQFNQEQDC SGLKLNLDSS LHNLPNFSSQ  360
PPFHDPYLHW GATPTPAPTP SVATTGGEVP GHQLNLSSVP HSSLIPLNHI PSKPQPEQQN  420
SCPVNVKAAV AAAAQPSPSP PTSNDPSTTA LLIREIKEEM RQQKRDEEGL HLLTLLLQCA  480
EAVSADNLEE ANKMLLEISE LSTPFGTSAQ RVAAYFSEAM SARLVSSCLG IYAALPPTLL  540
PHTHSQKIAS AFQVFNGISP FVKFSHFTAN QAIQEAFERE ERVHIIDLDI MQGLQWPGLF  600
HILASRPGGP PYVRLTGLGT SQEVLEATGK RLTEFAEKLG LPFDFFPVAD KIGNLDLERL  660
NVSQREAVAV HWMQHSLYEV TGSDSNTLWL LQRLAPKVVT VVEQDLSHTG SFLGRFVEAI  720
HYYSALFDSL GVSYGEESEE RHLVEQLLLS REIRNVLAVG GPSRSGEVKF QNWREKLQQS  780
GFKGISLAGN AATQATLLLG MFPSDGYTLV EDNGTLKLGW KDLCLLTASA WKPPFHHHAA  840
GNHIPRY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.10.0GRAS family protein